-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_8569916-8619666

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.1740-T1
Valid prediction for snap_scaffold_22-snap.1736-T1
Valid prediction for GlimmerHMM_glimmerT_49928-T1
Valid prediction for snap_scaffold_22-snap.1749-T1
Valid prediction for snap_scaffold_22-snap.1743-T1
Valid prediction for snap_scaffold_22-snap.1745-T1
Valid prediction for Augustus_model.g33309.t1
Valid prediction for GlimmerHMM_glimmerT_49924-T1
Valid prediction for snap_scaffold_22-snap.1742-T1
Valid prediction for GlimmerHMM_glimmerT_49925-T1
Valid prediction for snap_scaffold_22-snap.1739-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_22-snap.1747-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 12648, 12737
Sorry, prediction pasa_asmbl_29493.p1 fails validation.
(ATG)	 CA	10591-10741	GT	AGG
(CTT)	 AG	11316-11372	GT	GGG
(GTG)	 AG	11754-11836	GT	AGG
(GAT)	 AG	12648-12737	CA	ACC
-recovered pasa_asmbl_29493.p1, initial, 10591, 10741
-recovered pasa_asmbl_29493.p1, internal, 11316, 11372
-recovered pasa_asmbl_29493.p1, internal, 11754, 11836
Valid prediction for Augustus_model.g33307.t1
Valid prediction for Augustus_model.g33306.t1
Valid prediction for snap_scaffold_22-snap.1737-T1
Valid prediction for HiQ_model.g33308.t1
Valid prediction for snap_scaffold_22-snap.1744-T1
Valid prediction for GlimmerHMM_glimmerT_49927-T1
Valid prediction for snap_scaffold_22-snap.1751-T1
Valid prediction for GlimmerHMM_glimmerT_49922-T1
Valid prediction for GlimmerHMM_glimmerT_49920-T1
Valid prediction for snap_scaffold_22-snap.1746-T1
Valid prediction for GlimmerHMM_glimmerT_49923-T1
Valid prediction for GlimmerHMM_glimmerT_49919-T1
Couldn't classify 48489, 48573
Couldn't classify 48839, 48897
Sorry, prediction CodingQuarry_transcript_34250-T1 fails validation.
(ATG)	 CT	48489-48573	CT	TTC
(CGC)	 GC	48839-48897	CC	AGC
Valid prediction for GlimmerHMM_glimmerT_49921-T1
Valid prediction for snap_scaffold_22-snap.1750-T1
Couldn't classify 48450, 49742
Sorry, prediction pasa_asmbl_29490.p1 fails validation.
(ATG)	 TA	48450-49742	CG	CCC
Valid prediction for GlimmerHMM_glimmerT_49926-T1
Valid prediction for snap_scaffold_22-snap.1741-T1
Valid prediction for snap_scaffold_22-snap.1738-T1
Valid prediction for snap_scaffold_22-snap.1748-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12846, rend_intergenic: 4386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19369, rend_intergenic: 13479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22141, rend_intergenic: 20369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30269, rend_intergenic: 29035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38075, rend_intergenic: 36407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43101, rend_intergenic: 41624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44546, rend_intergenic: 43213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49279, rend_intergenic: 44892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 49751
-exon list size: 128


building trellis

0.8    
1.5    
2.3    
3.1    
3.8    
4.6    
5.4    
6.2    
6.9    
7.7    
8.5    
9.2    
10.0    
10.8    
11.5    
12.3    
13.1    
13.8    
14.6    
15.4    
16.2    
16.9    
17.7    
18.5    
19.2    
20.0    
20.8    
21.5    
22.3    
23.1    
23.8    
24.6    
25.4    
26.2    
26.9    
27.7    
28.5    
29.2    
30.0    
30.8    
31.5    
32.3    
33.1    
33.8    
34.6    
35.4    
36.2    
36.9    
37.7    
38.5    
39.2    
40.0    
40.8    
41.5    
42.3    
43.1    
43.8    
44.6    
45.4    
46.2    
46.9    
47.7    
48.5    
49.2    
50.0    
50.8    
51.5    
52.3    
53.1    
53.8    
54.6    
55.4    
56.2    
56.9    
57.7    
58.5    
59.2    
60.0    
60.8    
61.5    
62.3    
63.1    
63.8    
64.6    
65.4    
66.2    
66.9    
67.7    
68.5    
69.2    
70.0    
70.8    
71.5    
72.3    
73.1    
73.8    
74.6    
75.4    
76.2    
76.9    
77.7    
78.5    
79.2    
80.0    
80.8    
81.5    
82.3    
83.1    
83.8    
84.6    
85.4    
86.2    
86.9    
87.7    
88.5    
89.2    
90.0    
90.8    
91.5    
92.3    
93.1    
93.8    
94.6    
95.4    
96.2    
96.9    
97.7    
98.5    
99.2    
-found 10 predictions from path traversal
Error with prediction: snap lend_intergenic: 12846, rend_intergenic: 4386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19369, rend_intergenic: 13479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22141, rend_intergenic: 20369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30269, rend_intergenic: 29035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38075, rend_intergenic: 36407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43101, rend_intergenic: 41624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44546, rend_intergenic: 43213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49279, rend_intergenic: 44892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support