-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_7446287-7577488

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.1487-T1
Valid prediction for snap_scaffold_22-snap.1496-T1
Valid prediction for snap_scaffold_22-snap.1486-T1
Valid prediction for snap_scaffold_22-snap.1476-T1
Valid prediction for GlimmerHMM_glimmerT_49745-T1
Valid prediction for snap_scaffold_22-snap.1482-T1
Valid prediction for GlimmerHMM_glimmerT_49759-T1
Valid prediction for GlimmerHMM_glimmerT_49746-T1
Valid prediction for GlimmerHMM_glimmerT_49749-T1
Valid prediction for snap_scaffold_22-snap.1483-T1
Valid prediction for GlimmerHMM_glimmerT_49743-T1
Valid prediction for GlimmerHMM_glimmerT_49756-T1
Valid prediction for snap_scaffold_22-snap.1469-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_30508.p1
Valid prediction for Augustus_model.g33201.t1
Valid prediction for snap_scaffold_22-snap.1478-T1
Valid prediction for snap_scaffold_22-snap.1480-T1
Valid prediction for GlimmerHMM_glimmerT_49758-T1
Valid prediction for GlimmerHMM_glimmerT_49755-T1
Valid prediction for GlimmerHMM_glimmerT_49740-T1
Valid prediction for HiQ_model.g33203.t1
Valid prediction for snap_scaffold_22-snap.1497-T1
Valid prediction for Augustus_model.g33188.t1
Valid prediction for GlimmerHMM_glimmerT_49751-T1
Valid prediction for GlimmerHMM_glimmerT_49748-T1
Valid prediction for snap_scaffold_22-snap.1474-T1
Valid prediction for Augustus_model.g33196.t1
Couldn't classify 6843, 7802
Sorry, prediction pasa_asmbl_30186.p1 fails validation.
(GAT)	 CA	6843-7802	GG	GAG
Valid prediction for snap_scaffold_22-snap.1481-T1
Couldn't classify 42328, 42420
Sorry, prediction pasa_asmbl_30188.p1 fails validation.
(CAC)	 AA	42328-42420	GT	AGG
(GTT)	 AG	43010-43098	GT	AGG
(CTT)	 AG	43388-43511	GT	AGG
(ATC)	 AG	44010-44198	CG	AGC
-recovered pasa_asmbl_30188.p1, terminal, 44010, 44198
-recovered pasa_asmbl_30188.p1, internal, 43010, 43098
-recovered pasa_asmbl_30188.p1, internal, 43388, 43511
Valid prediction for GlimmerHMM_glimmerT_49738-T1
Valid prediction for pasa_asmbl_30499.p1
Valid prediction for snap_scaffold_22-snap.1465-T1
Valid prediction for HiQ_model.g33202.t1
Valid prediction for snap_scaffold_22-snap.1494-T1
Valid prediction for snap_scaffold_22-snap.1472-T1
Valid prediction for HiQ_model.g33193.t1
Valid prediction for snap_scaffold_22-snap.1471-T1
Valid prediction for GlimmerHMM_glimmerT_49757-T1
Valid prediction for snap_scaffold_22-snap.1485-T1
Couldn't classify 127351, 128054
Couldn't classify 128712, 128856
Sorry, prediction pasa_asmbl_30195.p2 fails validation.
(TTC)	 CC	127351-128054	GT	AGG
(GTA)	 AG	128712-128856	CA	GCC
Valid prediction for GlimmerHMM_glimmerT_49750-T1
Valid prediction for GlimmerHMM_glimmerT_49739-T1
Couldn't classify 126307, 126631
Couldn't classify 127010, 127251
Sorry, prediction pasa_asmbl_30193.p1 fails validation.
(CTC)	 AG	126307-126631	GT	AGG
(CCA)	 AG	127010-127251	AG	AGA
-recovered pasa_asmbl_30193.p1, internal, 126307, 126631
Valid prediction for HiQ_model.g33194.t1
Valid prediction for snap_scaffold_22-snap.1489-T1
Couldn't classify 46027, 47040
Sorry, prediction pasa_asmbl_30189.p1 fails validation.
(ATG)	 GA	46027-47040	CC	ACC
Valid prediction for HiQ_model.g33197.t1
Valid prediction for snap_scaffold_22-snap.1468-T1
Valid prediction for snap_scaffold_22-snap.1492-T1
Valid prediction for snap_scaffold_22-snap.1477-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_49753-T1
Valid prediction for snap_scaffold_22-snap.1484-T1
Couldn't classify 90278, 90370
Sorry, prediction pasa_asmbl_29408.p1 fails validation.
(ATG)	 CA	89170-89261	GT	AGG
(GAT)	 AG	89493-89720	GT	AGG
(TTC)	 AG	89845-89948	GT	AGG
(GTG)	 AG	90023-90159	GT	AGG
(GTT)	 AG	90278-90370	TT	CCT
-recovered pasa_asmbl_29408.p1, initial, 89170, 89261
-recovered pasa_asmbl_29408.p1, internal, 89493, 89720
-recovered pasa_asmbl_29408.p1, internal, 89845, 89948
-recovered pasa_asmbl_29408.p1, internal, 90023, 90159
Valid prediction for Augustus_model.g33200.t1
Valid prediction for snap_scaffold_22-snap.1466-T1
Valid prediction for GlimmerHMM_glimmerT_49754-T1
Valid prediction for Augustus_model.g33190.t1
Valid prediction for CodingQuarry_transcript_34211-T1
Valid prediction for snap_scaffold_22-snap.1500-T1
Valid prediction for Augustus_model.g33192.t1
Valid prediction for snap_scaffold_22-snap.1490-T1
Valid prediction for GlimmerHMM_glimmerT_49741-T1
Valid prediction for Augustus_model.g33199.t1
Valid prediction for snap_scaffold_22-snap.1473-T1
Valid prediction for snap_scaffold_22-snap.1475-T1
Valid prediction for Augustus_model.g33195.t1
Valid prediction for snap_scaffold_22-snap.1467-T1
Couldn't classify 105454, 105615
Couldn't classify 110787, 110932
Sorry, prediction pasa_asmbl_29730.p1 fails validation.
(GGA)	 CA	105454-105615	GT	AGG
(ATT)	 AG	106557-106656	GT	AGG
(GTG)	 AG	107027-107214	GT	AGG
(GGC)	 AG	107427-107549	GT	AGG
(ATC)	 AG	107788-107994	GT	AGG
(GTC)	 AG	108170-108250	GT	AGG
(GTG)	 AG	108638-108890	GT	CGG
(GAA)	 AG	109379-109671	GT	AGG
(GTC)	 AG	109863-110049	GT	GGG
(GCG)	 AG	110787-110932	CA	CGC
-recovered pasa_asmbl_29730.p1, internal, 106557, 106656
-recovered pasa_asmbl_29730.p1, internal, 107027, 107214
-recovered pasa_asmbl_29730.p1, internal, 107427, 107549
-recovered pasa_asmbl_29730.p1, internal, 107788, 107994
-recovered pasa_asmbl_29730.p1, internal, 108170, 108250
-recovered pasa_asmbl_29730.p1, internal, 108638, 108890
-recovered pasa_asmbl_29730.p1, internal, 109379, 109671
-recovered pasa_asmbl_29730.p1, internal, 109863, 110049
Couldn't classify 51742, 51761
Sorry, prediction pasa_asmbl_29410.p1 fails validation.
(ATG)	 AG	50194-50340	GT	GGG
(ACG)	 AG	50548-50662	GT	TAG
(CCT)	 AG	51085-51157	GT	AGG
(AGA)	 AG	51410-51501	GT	GGG
(AGT)	 AG	51742-51761	CC	GTC
-recovered pasa_asmbl_29410.p1, initial, 50194, 50340
-recovered pasa_asmbl_29410.p1, internal, 50194, 50340
-recovered pasa_asmbl_29410.p1, internal, 50548, 50662
-recovered pasa_asmbl_29410.p1, internal, 51085, 51157
-recovered pasa_asmbl_29410.p1, internal, 51410, 51501
Valid prediction for GlimmerHMM_glimmerT_49744-T1
Valid prediction for snap_scaffold_22-snap.1470-T1
Valid prediction for Augustus_model.g33189.t1
Valid prediction for snap_scaffold_22-snap.1493-T1
Valid prediction for Augustus_model.g33198.t1
Valid prediction for Augustus_model.g33191.t1
Valid prediction for snap_scaffold_22-snap.1498-T1
Valid prediction for GlimmerHMM_glimmerT_49742-T1
Valid prediction for GlimmerHMM_glimmerT_49747-T1
Valid prediction for snap_scaffold_22-snap.1491-T1
Valid prediction for snap_scaffold_22-snap.1479-T1
Valid prediction for snap_scaffold_22-snap.1495-T1
Valid prediction for GlimmerHMM_glimmerT_49752-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7802, rend_intergenic: 4529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21914, rend_intergenic: 10837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26318, rend_intergenic: 22086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35468, rend_intergenic: 28971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51001, rend_intergenic: 49190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83960, rend_intergenic: 73533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97729, rend_intergenic: 88957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103115, rend_intergenic: 102262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104772, rend_intergenic: 104372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107687, rend_intergenic: 105174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113514, rend_intergenic: 111432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124096, rend_intergenic: 117902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 131202
-exon list size: 299


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
8.0    
8.3    
8.6    
9.0    
9.3    
9.6    
10.0    
10.3    
10.6    
11.0    
11.3    
11.6    
12.0    
12.3    
12.6    
13.0    
13.3    
13.6    
14.0    
14.3    
14.6    
15.0    
15.3    
15.6    
15.9    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.3    
18.6    
18.9    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.3    
21.6    
21.9    
22.3    
22.6    
22.9    
23.3    
23.6    
23.9    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.6    
26.9    
27.2    
27.6    
27.9    
28.2    
28.6    
28.9    
29.2    
29.6    
29.9    
30.2    
30.6    
30.9    
31.2    
31.6    
31.9    
32.2    
32.6    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.2    
35.5    
35.9    
36.2    
36.5    
36.9    
37.2    
37.5    
37.9    
38.2    
38.5    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.9    
43.2    
43.5    
43.9    
44.2    
44.5    
44.9    
45.2    
45.5    
45.8    
46.2    
46.5    
46.8    
47.2    
47.5    
47.8    
48.2    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.8    
52.2    
52.5    
52.8    
53.2    
53.5    
53.8    
54.2    
54.5    
54.8    
55.1    
55.5    
55.8    
56.1    
56.5    
56.8    
57.1    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.5    
61.8    
62.1    
62.5    
62.8    
63.1    
63.5    
63.8    
64.1    
64.5    
64.8    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.4    
67.8    
68.1    
68.4    
68.8    
69.1    
69.4    
69.8    
70.1    
70.4    
70.8    
71.1    
71.4    
71.8    
72.1    
72.4    
72.8    
73.1    
73.4    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.1    
76.4    
76.7    
77.1    
77.4    
77.7    
78.1    
78.4    
78.7    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.1    
81.4    
81.7    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.1    
84.4    
84.7    
85.0    
85.4    
85.7    
86.0    
86.4    
86.7    
87.0    
87.4    
87.7    
88.0    
88.4    
88.7    
89.0    
89.4    
89.7    
90.0    
90.4    
90.7    
91.0    
91.4    
91.7    
92.0    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 7802, rend_intergenic: 4529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21914, rend_intergenic: 10837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26318, rend_intergenic: 22086  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35468, rend_intergenic: 28971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51001, rend_intergenic: 49190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83960, rend_intergenic: 73533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97729, rend_intergenic: 88957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103115, rend_intergenic: 102262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104772, rend_intergenic: 104372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107687, rend_intergenic: 105174  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113514, rend_intergenic: 111432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124096, rend_intergenic: 117902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support