-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_6534555-6709589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_49625-T1
Valid prediction for Augustus_model.g33108.t1
Valid prediction for snap_scaffold_22-snap.1267-T1
Valid prediction for snap_scaffold_22-snap.1298-T1
Valid prediction for Augustus_model.g33096.t1
Valid prediction for snap_scaffold_22-snap.1282-T1
Valid prediction for snap_scaffold_22-snap.1279-T1
Valid prediction for snap_scaffold_22-snap.1294-T1
Valid prediction for Augustus_model.g33100.t1
Valid prediction for GlimmerHMM_glimmerT_49627-T1
Valid prediction for snap_scaffold_22-snap.1288-T1
Valid prediction for GlimmerHMM_glimmerT_49633-T1
Valid prediction for GlimmerHMM_glimmerT_49634-T1
Valid prediction for GlimmerHMM_glimmerT_49624-T1
Valid prediction for GlimmerHMM_glimmerT_49638-T1
Valid prediction for snap_scaffold_22-snap.1273-T1
Valid prediction for snap_scaffold_22-snap.1277-T1
Valid prediction for snap_scaffold_22-snap.1297-T1
Valid prediction for GlimmerHMM_glimmerT_49623-T1
Valid prediction for Augustus_model.g33103.t1
Valid prediction for GlimmerHMM_glimmerT_49636-T1
Valid prediction for snap_scaffold_22-snap.1283-T1
Valid prediction for Augustus_model.g33107.t1
Valid prediction for Augustus_model.g33102.t1
Valid prediction for Augustus_model.g33106.t1
Valid prediction for GlimmerHMM_glimmerT_49640-T1
Valid prediction for snap_scaffold_22-snap.1269-T1
Valid prediction for snap_scaffold_22-snap.1292-T1
Valid prediction for Augustus_model.g33105.t1
Valid prediction for Augustus_model.g33097.t1
Valid prediction for GlimmerHMM_glimmerT_49622-T1
Valid prediction for snap_scaffold_22-snap.1275-T1
Valid prediction for Augustus_model.g33099.t1
Valid prediction for GlimmerHMM_glimmerT_49632-T1
Valid prediction for GlimmerHMM_glimmerT_49621-T1
Valid prediction for snap_scaffold_22-snap.1296-T1
Valid prediction for Augustus_model.g33104.t1
Valid prediction for snap_scaffold_22-snap.1300-T1
Valid prediction for snap_scaffold_22-snap.1290-T1
Valid prediction for GlimmerHMM_glimmerT_49637-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.1289-T1
Valid prediction for GlimmerHMM_glimmerT_49617-T1
Valid prediction for GlimmerHMM_glimmerT_49639-T1
Valid prediction for Augustus_model.g33101.t1
Valid prediction for GlimmerHMM_glimmerT_49629-T1
Valid prediction for snap_scaffold_22-snap.1274-T1
Valid prediction for snap_scaffold_22-snap.1305-T1
Valid prediction for snap_scaffold_22-snap.1281-T1
Valid prediction for snap_scaffold_22-snap.1293-T1
Valid prediction for snap_scaffold_22-snap.1270-T1
Valid prediction for snap_scaffold_22-snap.1272-T1
Valid prediction for snap_scaffold_22-snap.1301-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_49630-T1
Valid prediction for GlimmerHMM_glimmerT_49620-T1
Valid prediction for snap_scaffold_22-snap.1278-T1
Valid prediction for snap_scaffold_22-snap.1268-T1
Valid prediction for snap_scaffold_22-snap.1295-T1
Valid prediction for snap_scaffold_22-snap.1287-T1
Valid prediction for GlimmerHMM_glimmerT_49626-T1
Valid prediction for snap_scaffold_22-snap.1304-T1
Valid prediction for snap_scaffold_22-snap.1284-T1
Valid prediction for snap_scaffold_22-snap.1286-T1
Valid prediction for GlimmerHMM_glimmerT_49628-T1
Valid prediction for GlimmerHMM_glimmerT_49635-T1
Valid prediction for snap_scaffold_22-snap.1302-T1
Valid prediction for Augustus_model.g33098.t1
Valid prediction for snap_scaffold_22-snap.1276-T1
Valid prediction for snap_scaffold_22-snap.1271-T1
Valid prediction for snap_scaffold_22-snap.1280-T1
Valid prediction for GlimmerHMM_glimmerT_49619-T1
Valid prediction for snap_scaffold_22-snap.1299-T1
Valid prediction for GlimmerHMM_glimmerT_49618-T1
Valid prediction for snap_scaffold_22-snap.1285-T1
Valid prediction for GlimmerHMM_glimmerT_49631-T1
Valid prediction for snap_scaffold_22-snap.1291-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9559, rend_intergenic: 4332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10641, rend_intergenic: 9602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45921, rend_intergenic: 11184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52920, rend_intergenic: 48390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73704, rend_intergenic: 68747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76201, rend_intergenic: 74422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76923, rend_intergenic: 76749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79459, rend_intergenic: 77291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84945, rend_intergenic: 79815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94064, rend_intergenic: 85270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111558, rend_intergenic: 94295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116651, rend_intergenic: 114797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121672, rend_intergenic: 119324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121821, rend_intergenic: 121726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125181, rend_intergenic: 122650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126623, rend_intergenic: 125859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135645, rend_intergenic: 132735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145102, rend_intergenic: 142166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151085, rend_intergenic: 145563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164740, rend_intergenic: 151163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 175035
-exon list size: 295


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.4    
2.7    
3.0    
3.4    
3.7    
4.0    
4.4    
4.7    
5.1    
5.4    
5.7    
6.1    
6.4    
6.7    
7.1    
7.4    
7.7    
8.1    
8.4    
8.8    
9.1    
9.4    
9.8    
10.1    
10.4    
10.8    
11.1    
11.4    
11.8    
12.1    
12.5    
12.8    
13.1    
13.5    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.8    
16.2    
16.5    
16.8    
17.2    
17.5    
17.8    
18.2    
18.5    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.5    
21.9    
22.2    
22.6    
22.9    
23.2    
23.6    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
25.9    
26.3    
26.6    
26.9    
27.3    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.6    
30.0    
30.3    
30.6    
31.0    
31.3    
31.6    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.4    
35.7    
36.0    
36.4    
36.7    
37.0    
37.4    
37.7    
38.0    
38.4    
38.7    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.1    
41.4    
41.8    
42.1    
42.4    
42.8    
43.1    
43.4    
43.8    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.1    
46.5    
46.8    
47.1    
47.5    
47.8    
48.1    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.9    
52.2    
52.5    
52.9    
53.2    
53.5    
53.9    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.2    
56.6    
56.9    
57.2    
57.6    
57.9    
58.2    
58.6    
58.9    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.3    
61.6    
62.0    
62.3    
62.6    
63.0    
63.3    
63.6    
64.0    
64.3    
64.6    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.4    
68.7    
69.0    
69.4    
69.7    
70.0    
70.4    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.7    
73.1    
73.4    
73.7    
74.1    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.4    
76.8    
77.1    
77.4    
77.8    
78.1    
78.5    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.5    
81.8    
82.2    
82.5    
82.8    
83.2    
83.5    
83.8    
84.2    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.5    
86.9    
87.2    
87.5    
87.9    
88.2    
88.6    
88.9    
89.2    
89.6    
89.9    
90.2    
90.6    
90.9    
91.2    
91.6    
91.9    
92.3    
92.6    
92.9    
93.3    
93.6    
93.9    
94.3    
94.6    
94.9    
95.3    
95.6    
96.0    
96.3    
96.6    
97.0    
97.3    
97.6    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 9559, rend_intergenic: 4332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10641, rend_intergenic: 9602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45921, rend_intergenic: 11184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52920, rend_intergenic: 48390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73704, rend_intergenic: 68747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76201, rend_intergenic: 74422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76923, rend_intergenic: 76749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79459, rend_intergenic: 77291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84945, rend_intergenic: 79815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94064, rend_intergenic: 85270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111558, rend_intergenic: 94295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116651, rend_intergenic: 114797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121672, rend_intergenic: 119324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121821, rend_intergenic: 121726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125181, rend_intergenic: 122650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126623, rend_intergenic: 125859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135645, rend_intergenic: 132735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145102, rend_intergenic: 142166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151085, rend_intergenic: 145563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164740, rend_intergenic: 151163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support