-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_5294758-5496784

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.982-T1
Valid prediction for snap_scaffold_22-snap.988-T1
Valid prediction for Augustus_model.g32972.t1
Valid prediction for snap_scaffold_22-snap.997-T1
Valid prediction for Augustus_model.g32978.t1
Valid prediction for Augustus_model.g32970.t1
Valid prediction for snap_scaffold_22-snap.1008-T1
Valid prediction for Augustus_model.g32973.t1
Valid prediction for GlimmerHMM_glimmerT_49449-T1
Valid prediction for GlimmerHMM_glimmerT_49445-T1
Valid prediction for GlimmerHMM_glimmerT_49446-T1
Valid prediction for snap_scaffold_22-snap.979-T1
Valid prediction for snap_scaffold_22-snap.1009-T1
Valid prediction for snap_scaffold_22-snap.980-T1
Valid prediction for GlimmerHMM_glimmerT_49437-T1
Valid prediction for snap_scaffold_22-snap.1002-T1
Valid prediction for Augustus_model.g32975.t1
Valid prediction for snap_scaffold_22-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_49435-T1
Valid prediction for snap_scaffold_22-snap.983-T1
Valid prediction for snap_scaffold_22-snap.1004-T1
Valid prediction for snap_scaffold_22-snap.1012-T1
Valid prediction for GlimmerHMM_glimmerT_49452-T1
Valid prediction for GlimmerHMM_glimmerT_49431-T1
Valid prediction for GlimmerHMM_glimmerT_49440-T1
Valid prediction for GlimmerHMM_glimmerT_49448-T1
Valid prediction for snap_scaffold_22-snap.992-T1
Valid prediction for snap_scaffold_22-snap.985-T1
Valid prediction for snap_scaffold_22-snap.989-T1
Valid prediction for snap_scaffold_22-snap.995-T1
Valid prediction for snap_scaffold_22-snap.998-T1
Valid prediction for snap_scaffold_22-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_49447-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.977-T1
Valid prediction for snap_scaffold_22-snap.984-T1
Valid prediction for snap_scaffold_22-snap.999-T1
Valid prediction for snap_scaffold_22-snap.1013-T1
Valid prediction for GlimmerHMM_glimmerT_49438-T1
Valid prediction for snap_scaffold_22-snap.981-T1
Valid prediction for GlimmerHMM_glimmerT_49450-T1
Valid prediction for GlimmerHMM_glimmerT_49436-T1
Valid prediction for GlimmerHMM_glimmerT_49434-T1
Valid prediction for snap_scaffold_22-snap.1003-T1
Valid prediction for GlimmerHMM_glimmerT_49430-T1
Valid prediction for snap_scaffold_22-snap.996-T1
Valid prediction for snap_scaffold_22-snap.1010-T1
Valid prediction for Augustus_model.g32974.t1
Valid prediction for snap_scaffold_22-snap.993-T1
Valid prediction for snap_scaffold_22-snap.994-T1
Valid prediction for snap_scaffold_22-snap.991-T1
Valid prediction for GlimmerHMM_glimmerT_49439-T1
Valid prediction for snap_scaffold_22-snap.1001-T1
Valid prediction for GlimmerHMM_glimmerT_49429-T1
Valid prediction for snap_scaffold_22-snap.1000-T1
Valid prediction for Augustus_model.g32977.t1
Valid prediction for snap_scaffold_22-snap.986-T1
Valid prediction for snap_scaffold_22-snap.978-T1
Valid prediction for GlimmerHMM_glimmerT_49443-T1
Valid prediction for snap_scaffold_22-snap.987-T1
Valid prediction for snap_scaffold_22-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_49442-T1
Valid prediction for GlimmerHMM_glimmerT_49444-T1
Valid prediction for GlimmerHMM_glimmerT_49432-T1
Valid prediction for snap_scaffold_22-snap.1005-T1
Valid prediction for Augustus_model.g32971.t1
Valid prediction for GlimmerHMM_glimmerT_49441-T1
Valid prediction for snap_scaffold_22-snap.990-T1
Valid prediction for GlimmerHMM_glimmerT_49433-T1
Valid prediction for Augustus_model.g32976.t1
Valid prediction for GlimmerHMM_glimmerT_49451-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17673, rend_intergenic: 16699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38121, rend_intergenic: 37294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96382, rend_intergenic: 94713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109889, rend_intergenic: 105608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175498, rend_intergenic: 170869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184558, rend_intergenic: 181598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190959, rend_intergenic: 187302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202027
-exon list size: 193


building trellis

0.5    
1.0    
1.5    
2.1    
2.6    
3.1    
3.6    
4.1    
4.6    
5.1    
5.6    
6.2    
6.7    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.3    
10.8    
11.3    
11.8    
12.3    
12.8    
13.3    
13.8    
14.4    
14.9    
15.4    
15.9    
16.4    
16.9    
17.4    
17.9    
18.5    
19.0    
19.5    
20.0    
20.5    
21.0    
21.5    
22.1    
22.6    
23.1    
23.6    
24.1    
24.6    
25.1    
25.6    
26.2    
26.7    
27.2    
27.7    
28.2    
28.7    
29.2    
29.7    
30.3    
30.8    
31.3    
31.8    
32.3    
32.8    
33.3    
33.8    
34.4    
34.9    
35.4    
35.9    
36.4    
36.9    
37.4    
37.9    
38.5    
39.0    
39.5    
40.0    
40.5    
41.0    
41.5    
42.1    
42.6    
43.1    
43.6    
44.1    
44.6    
45.1    
45.6    
46.2    
46.7    
47.2    
47.7    
48.2    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.8    
52.3    
52.8    
53.3    
53.8    
54.4    
54.9    
55.4    
55.9    
56.4    
56.9    
57.4    
57.9    
58.5    
59.0    
59.5    
60.0    
60.5    
61.0    
61.5    
62.1    
62.6    
63.1    
63.6    
64.1    
64.6    
65.1    
65.6    
66.2    
66.7    
67.2    
67.7    
68.2    
68.7    
69.2    
69.7    
70.3    
70.8    
71.3    
71.8    
72.3    
72.8    
73.3    
73.8    
74.4    
74.9    
75.4    
75.9    
76.4    
76.9    
77.4    
77.9    
78.5    
79.0    
79.5    
80.0    
80.5    
81.0    
81.5    
82.1    
82.6    
83.1    
83.6    
84.1    
84.6    
85.1    
85.6    
86.2    
86.7    
87.2    
87.7    
88.2    
88.7    
89.2    
89.7    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.3    
93.8    
94.4    
94.9    
95.4    
95.9    
96.4    
96.9    
97.4    
97.9    
98.5    
99.0    
99.5    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 17673, rend_intergenic: 16699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38121, rend_intergenic: 37294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96382, rend_intergenic: 94713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109889, rend_intergenic: 105608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175498, rend_intergenic: 170869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184558, rend_intergenic: 181598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190959, rend_intergenic: 187302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 190200 - 202027
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 190200 - 201266
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 190960 - 201266
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support