-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_5079979-5297179

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.961-T1
Valid prediction for GlimmerHMM_glimmerT_49422-T1
Valid prediction for GlimmerHMM_glimmerT_49405-T1
Valid prediction for GlimmerHMM_glimmerT_49414-T1
Valid prediction for snap_scaffold_22-snap.958-T1
Valid prediction for snap_scaffold_22-snap.963-T1
Valid prediction for snap_scaffold_22-snap.950-T1
Valid prediction for Augustus_model.g32965.t1
Valid prediction for Augustus_model.g32968.t1
Valid prediction for GlimmerHMM_glimmerT_49418-T1
Valid prediction for GlimmerHMM_glimmerT_49423-T1
Valid prediction for snap_scaffold_22-snap.969-T1
Valid prediction for snap_scaffold_22-snap.964-T1
Valid prediction for snap_scaffold_22-snap.968-T1
Valid prediction for GlimmerHMM_glimmerT_49415-T1
Valid prediction for snap_scaffold_22-snap.972-T1
Valid prediction for Augustus_model.g32962.t1
Valid prediction for snap_scaffold_22-snap.952-T1
Valid prediction for snap_scaffold_22-snap.948-T1
Valid prediction for snap_scaffold_22-snap.974-T1
Valid prediction for GlimmerHMM_glimmerT_49424-T1
Valid prediction for snap_scaffold_22-snap.954-T1
Valid prediction for GlimmerHMM_glimmerT_49416-T1
Valid prediction for snap_scaffold_22-snap.960-T1
Valid prediction for snap_scaffold_22-snap.956-T1
Valid prediction for snap_scaffold_22-snap.976-T1
Valid prediction for GlimmerHMM_glimmerT_49421-T1
Valid prediction for GlimmerHMM_glimmerT_49426-T1
Valid prediction for Augustus_model.g32964.t1
Valid prediction for snap_scaffold_22-snap.957-T1
Valid prediction for snap_scaffold_22-snap.970-T1
Valid prediction for snap_scaffold_22-snap.947-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.951-T1
Valid prediction for GlimmerHMM_glimmerT_49408-T1
Valid prediction for snap_scaffold_22-snap.946-T1
Valid prediction for Augustus_model.g32963.t1
Valid prediction for snap_scaffold_22-snap.967-T1
Valid prediction for GlimmerHMM_glimmerT_49412-T1
Valid prediction for snap_scaffold_22-snap.962-T1
Valid prediction for snap_scaffold_22-snap.966-T1
Valid prediction for GlimmerHMM_glimmerT_49404-T1
Valid prediction for GlimmerHMM_glimmerT_49419-T1
Valid prediction for GlimmerHMM_glimmerT_49428-T1
Valid prediction for Augustus_model.g32967.t1
Valid prediction for snap_scaffold_22-snap.975-T1
Valid prediction for snap_scaffold_22-snap.945-T1
Valid prediction for GlimmerHMM_glimmerT_49420-T1
Valid prediction for Augustus_model.g32966.t1
Valid prediction for snap_scaffold_22-snap.971-T1
Valid prediction for snap_scaffold_22-snap.953-T1
Valid prediction for GlimmerHMM_glimmerT_49407-T1
Valid prediction for GlimmerHMM_glimmerT_49406-T1
Valid prediction for snap_scaffold_22-snap.973-T1
Valid prediction for GlimmerHMM_glimmerT_49410-T1
Valid prediction for GlimmerHMM_glimmerT_49427-T1
Valid prediction for GlimmerHMM_glimmerT_49411-T1
Valid prediction for GlimmerHMM_glimmerT_49417-T1
Valid prediction for GlimmerHMM_glimmerT_49413-T1
Valid prediction for snap_scaffold_22-snap.965-T1
Valid prediction for Augustus_model.g32969.t1
Valid prediction for GlimmerHMM_glimmerT_49425-T1
Valid prediction for snap_scaffold_22-snap.959-T1
Valid prediction for snap_scaffold_22-snap.955-T1
Valid prediction for snap_scaffold_22-snap.949-T1
Valid prediction for GlimmerHMM_glimmerT_49409-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 150960, rend_intergenic: 141461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170818, rend_intergenic: 160852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174147, rend_intergenic: 172853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191028, rend_intergenic: 189416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194660, rend_intergenic: 191070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201800, rend_intergenic: 196976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206686, rend_intergenic: 202725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213377, rend_intergenic: 207210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217201
-exon list size: 200


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.5    
4.0    
4.5    
5.0    
5.4    
5.9    
6.4    
6.9    
7.4    
7.9    
8.4    
8.9    
9.4    
9.9    
10.4    
10.9    
11.4    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
15.3    
15.8    
16.3    
16.8    
17.3    
17.8    
18.3    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.8    
22.3    
22.8    
23.3    
23.8    
24.3    
24.8    
25.2    
25.7    
26.2    
26.7    
27.2    
27.7    
28.2    
28.7    
29.2    
29.7    
30.2    
30.7    
31.2    
31.7    
32.2    
32.7    
33.2    
33.7    
34.2    
34.7    
35.1    
35.6    
36.1    
36.6    
37.1    
37.6    
38.1    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.6    
42.1    
42.6    
43.1    
43.6    
44.1    
44.6    
45.0    
45.5    
46.0    
46.5    
47.0    
47.5    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.5    
53.0    
53.5    
54.0    
54.5    
55.0    
55.4    
55.9    
56.4    
56.9    
57.4    
57.9    
58.4    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.9    
62.4    
62.9    
63.4    
63.9    
64.4    
64.9    
65.3    
65.8    
66.3    
66.8    
67.3    
67.8    
68.3    
68.8    
69.3    
69.8    
70.3    
70.8    
71.3    
71.8    
72.3    
72.8    
73.3    
73.8    
74.3    
74.8    
75.2    
75.7    
76.2    
76.7    
77.2    
77.7    
78.2    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.7    
82.2    
82.7    
83.2    
83.7    
84.2    
84.7    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.6    
89.1    
89.6    
90.1    
90.6    
91.1    
91.6    
92.1    
92.6    
93.1    
93.6    
94.1    
94.6    
95.0    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 150960, rend_intergenic: 141461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170818, rend_intergenic: 160852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174147, rend_intergenic: 172853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191028, rend_intergenic: 189416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194660, rend_intergenic: 191070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201800, rend_intergenic: 196976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206686, rend_intergenic: 202725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213377, rend_intergenic: 207210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support