-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_3339017-3473480

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.574-T1
Valid prediction for snap_scaffold_22-snap.580-T1
Valid prediction for Augustus_model.g32815.t1
Valid prediction for Augustus_model.g32816.t1
Valid prediction for GlimmerHMM_glimmerT_49173-T1
Valid prediction for GlimmerHMM_glimmerT_49156-T1
Valid prediction for snap_scaffold_22-snap.604-T1
Valid prediction for snap_scaffold_22-snap.606-T1
Valid prediction for GlimmerHMM_glimmerT_49170-T1
Valid prediction for snap_scaffold_22-snap.583-T1
Valid prediction for Augustus_model.g32811.t1
Valid prediction for GlimmerHMM_glimmerT_49171-T1
Valid prediction for snap_scaffold_22-snap.588-T1
Valid prediction for snap_scaffold_22-snap.576-T1
Valid prediction for snap_scaffold_22-snap.596-T1
Valid prediction for Augustus_model.g32813.t1
Valid prediction for GlimmerHMM_glimmerT_49155-T1
Valid prediction for snap_scaffold_22-snap.601-T1
Valid prediction for Augustus_model.g32808.t1
Valid prediction for GlimmerHMM_glimmerT_49172-T1
Valid prediction for Augustus_model.g32807.t1
Valid prediction for GlimmerHMM_glimmerT_49158-T1
Valid prediction for snap_scaffold_22-snap.581-T1
Valid prediction for Augustus_model.g32817.t1
Valid prediction for GlimmerHMM_glimmerT_49169-T1
Valid prediction for snap_scaffold_22-snap.597-T1
Valid prediction for snap_scaffold_22-snap.594-T1
Valid prediction for snap_scaffold_22-snap.595-T1
Valid prediction for snap_scaffold_22-snap.599-T1
Valid prediction for GlimmerHMM_glimmerT_49174-T1
Valid prediction for snap_scaffold_22-snap.578-T1
Valid prediction for Augustus_model.g32812.t1
Valid prediction for GlimmerHMM_glimmerT_49163-T1
Valid prediction for GlimmerHMM_glimmerT_49165-T1
Valid prediction for GlimmerHMM_glimmerT_49168-T1
Valid prediction for snap_scaffold_22-snap.586-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.584-T1
Valid prediction for GlimmerHMM_glimmerT_49160-T1
Valid prediction for snap_scaffold_22-snap.591-T1
Valid prediction for GlimmerHMM_glimmerT_49154-T1
Valid prediction for snap_scaffold_22-snap.577-T1
Valid prediction for GlimmerHMM_glimmerT_49162-T1
Valid prediction for snap_scaffold_22-snap.593-T1
Valid prediction for GlimmerHMM_glimmerT_49153-T1
Valid prediction for GlimmerHMM_glimmerT_49152-T1
Valid prediction for snap_scaffold_22-snap.573-T1
Valid prediction for snap_scaffold_22-snap.587-T1
Valid prediction for snap_scaffold_22-snap.579-T1
Valid prediction for snap_scaffold_22-snap.605-T1
Valid prediction for snap_scaffold_22-snap.585-T1
Valid prediction for GlimmerHMM_glimmerT_49159-T1
Valid prediction for GlimmerHMM_glimmerT_49149-T1
Valid prediction for snap_scaffold_22-snap.603-T1
Valid prediction for GlimmerHMM_glimmerT_49167-T1
Valid prediction for snap_scaffold_22-snap.575-T1
Valid prediction for snap_scaffold_22-snap.582-T1
Valid prediction for Augustus_model.g32806.t1
Valid prediction for Augustus_model.g32805.t1
Valid prediction for Augustus_model.g32810.t1
Valid prediction for snap_scaffold_22-snap.589-T1
Valid prediction for snap_scaffold_22-snap.590-T1
Valid prediction for GlimmerHMM_glimmerT_49157-T1
Valid prediction for GlimmerHMM_glimmerT_49166-T1
Valid prediction for snap_scaffold_22-snap.598-T1
Valid prediction for GlimmerHMM_glimmerT_49151-T1
Valid prediction for GlimmerHMM_glimmerT_49161-T1
Valid prediction for Augustus_model.g32809.t1
Valid prediction for snap_scaffold_22-snap.592-T1
Valid prediction for snap_scaffold_22-snap.602-T1
Valid prediction for Augustus_model.g32814.t1
Valid prediction for snap_scaffold_22-snap.600-T1
Valid prediction for GlimmerHMM_glimmerT_49150-T1
Valid prediction for GlimmerHMM_glimmerT_49164-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4484, rend_intergenic: 3516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6794, rend_intergenic: 6666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9683, rend_intergenic: 7558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20214, rend_intergenic: 10031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27110, rend_intergenic: 20303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30996, rend_intergenic: 28052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42394, rend_intergenic: 33890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52031, rend_intergenic: 43565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59496, rend_intergenic: 54552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71252, rend_intergenic: 65358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101062, rend_intergenic: 99585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108404, rend_intergenic: 106992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115253, rend_intergenic: 108857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132194, rend_intergenic: 127034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 134464
-exon list size: 268


building trellis

0.4    
0.7    
1.1    
1.5    
1.9    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.4    
4.8    
5.2    
5.6    
5.9    
6.3    
6.7    
7.0    
7.4    
7.8    
8.1    
8.5    
8.9    
9.3    
9.6    
10.0    
10.4    
10.7    
11.1    
11.5    
11.9    
12.2    
12.6    
13.0    
13.3    
13.7    
14.1    
14.4    
14.8    
15.2    
15.6    
15.9    
16.3    
16.7    
17.0    
17.4    
17.8    
18.1    
18.5    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.5    
21.9    
22.2    
22.6    
23.0    
23.3    
23.7    
24.1    
24.4    
24.8    
25.2    
25.6    
25.9    
26.3    
26.7    
27.0    
27.4    
27.8    
28.1    
28.5    
28.9    
29.3    
29.6    
30.0    
30.4    
30.7    
31.1    
31.5    
31.9    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.2    
35.6    
35.9    
36.3    
36.7    
37.0    
37.4    
37.8    
38.1    
38.5    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.5    
41.9    
42.2    
42.6    
43.0    
43.3    
43.7    
44.1    
44.4    
44.8    
45.2    
45.6    
45.9    
46.3    
46.7    
47.0    
47.4    
47.8    
48.1    
48.5    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.5    
51.9    
52.2    
52.6    
53.0    
53.3    
53.7    
54.1    
54.4    
54.8    
55.2    
55.6    
55.9    
56.3    
56.7    
57.0    
57.4    
57.8    
58.1    
58.5    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.5    
61.9    
62.2    
62.6    
63.0    
63.3    
63.7    
64.1    
64.4    
64.8    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.1    
68.5    
68.9    
69.3    
69.6    
70.0    
70.4    
70.7    
71.1    
71.5    
71.9    
72.2    
72.6    
73.0    
73.3    
73.7    
74.1    
74.4    
74.8    
75.2    
75.6    
75.9    
76.3    
76.7    
77.0    
77.4    
77.8    
78.1    
78.5    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.5    
81.9    
82.2    
82.6    
83.0    
83.3    
83.7    
84.1    
84.4    
84.8    
85.2    
85.6    
85.9    
86.3    
86.7    
87.0    
87.4    
87.8    
88.1    
88.5    
88.9    
89.3    
89.6    
90.0    
90.4    
90.7    
91.1    
91.5    
91.9    
92.2    
92.6    
93.0    
93.3    
93.7    
94.1    
94.4    
94.8    
95.2    
95.6    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 4484, rend_intergenic: 3516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6794, rend_intergenic: 6666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9683, rend_intergenic: 7558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20214, rend_intergenic: 10031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27110, rend_intergenic: 20303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30996, rend_intergenic: 28052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42394, rend_intergenic: 33890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52031, rend_intergenic: 43565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59496, rend_intergenic: 54552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71252, rend_intergenic: 65358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101062, rend_intergenic: 99585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108404, rend_intergenic: 106992  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115253, rend_intergenic: 108857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132194, rend_intergenic: 127034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support