-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_3037064-3219888

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.537-T1
Valid prediction for snap_scaffold_22-snap.497-T1
Valid prediction for snap_scaffold_22-snap.503-T1
Valid prediction for GlimmerHMM_glimmerT_49108-T1
Valid prediction for snap_scaffold_22-snap.530-T1
Valid prediction for HiQ_model.g32777.t1
Valid prediction for Augustus_model.g32787.t1
Valid prediction for GlimmerHMM_glimmerT_49119-T1
Valid prediction for snap_scaffold_22-snap.538-T1
Valid prediction for GlimmerHMM_glimmerT_49122-T1
Valid prediction for snap_scaffold_22-snap.525-T1
Valid prediction for GlimmerHMM_glimmerT_49112-T1
Valid prediction for snap_scaffold_22-snap.501-T1
Valid prediction for Augustus_model.g32791.t1
Valid prediction for snap_scaffold_22-snap.494-T1
Valid prediction for pasa_asmbl_29950.p1
Valid prediction for snap_scaffold_22-snap.531-T1
Valid prediction for GlimmerHMM_glimmerT_49110-T1
Valid prediction for snap_scaffold_22-snap.499-T1
Valid prediction for snap_scaffold_22-snap.524-T1
Valid prediction for snap_scaffold_22-snap.523-T1
Valid prediction for GlimmerHMM_glimmerT_49096-T1
Valid prediction for GlimmerHMM_glimmerT_49121-T1
Valid prediction for snap_scaffold_22-snap.507-T1
Valid prediction for snap_scaffold_22-snap.519-T1
Valid prediction for snap_scaffold_22-snap.534-T1
Valid prediction for GlimmerHMM_glimmerT_49117-T1
Valid prediction for snap_scaffold_22-snap.515-T1
Valid prediction for GlimmerHMM_glimmerT_49107-T1
Valid prediction for snap_scaffold_22-snap.495-T1
Valid prediction for Augustus_model.g32782.t1
Valid prediction for snap_scaffold_22-snap.511-T1
Valid prediction for GlimmerHMM_glimmerT_49097-T1
Valid prediction for snap_scaffold_22-snap.526-T1
Valid prediction for GlimmerHMM_glimmerT_49099-T1
Valid prediction for snap_scaffold_22-snap.506-T1
Valid prediction for GlimmerHMM_glimmerT_49101-T1
Valid prediction for GlimmerHMM_glimmerT_49105-T1
Valid prediction for snap_scaffold_22-snap.509-T1
Valid prediction for snap_scaffold_22-snap.520-T1
Valid prediction for snap_scaffold_22-snap.500-T1
Valid prediction for snap_scaffold_22-snap.502-T1
Valid prediction for GlimmerHMM_glimmerT_49104-T1
Valid prediction for Augustus_model.g32786.t1
Valid prediction for Augustus_model.g32781.t1
Valid prediction for GlimmerHMM_glimmerT_49103-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.514-T1
Valid prediction for Augustus_model.g32779.t1
Valid prediction for snap_scaffold_22-snap.516-T1
Valid prediction for GlimmerHMM_glimmerT_49118-T1
Valid prediction for GlimmerHMM_glimmerT_49100-T1
Valid prediction for GlimmerHMM_glimmerT_49120-T1
Valid prediction for snap_scaffold_22-snap.527-T1
Valid prediction for Augustus_model.g32788.t1
Valid prediction for Augustus_model.g32780.t1
Valid prediction for snap_scaffold_22-snap.508-T1
Valid prediction for snap_scaffold_22-snap.535-T1
Valid prediction for snap_scaffold_22-snap.518-T1
Valid prediction for snap_scaffold_22-snap.528-T1
Valid prediction for snap_scaffold_22-snap.505-T1
Valid prediction for GlimmerHMM_glimmerT_49098-T1
Valid prediction for Augustus_model.g32792.t1
Valid prediction for snap_scaffold_22-snap.529-T1
Valid prediction for Augustus_model.g32790.t1
Valid prediction for snap_scaffold_22-snap.533-T1
Valid prediction for snap_scaffold_22-snap.521-T1
Valid prediction for GlimmerHMM_glimmerT_49102-T1
Valid prediction for GlimmerHMM_glimmerT_49106-T1
Valid prediction for GlimmerHMM_glimmerT_49109-T1
Valid prediction for snap_scaffold_22-snap.532-T1
Valid prediction for GlimmerHMM_glimmerT_49114-T1
Valid prediction for snap_scaffold_22-snap.504-T1
Valid prediction for snap_scaffold_22-snap.513-T1
Valid prediction for Augustus_model.g32789.t1
Valid prediction for Augustus_model.g32785.t1
Valid prediction for snap_scaffold_22-snap.510-T1
Valid prediction for GlimmerHMM_glimmerT_49123-T1
Valid prediction for snap_scaffold_22-snap.536-T1
Valid prediction for snap_scaffold_22-snap.512-T1
Valid prediction for Augustus_model.g32784.t1
Valid prediction for GlimmerHMM_glimmerT_49113-T1
Valid prediction for snap_scaffold_22-snap.496-T1
Valid prediction for Augustus_model.g32783.t1
Valid prediction for snap_scaffold_22-snap.498-T1
Valid prediction for GlimmerHMM_glimmerT_49116-T1
Valid prediction for snap_scaffold_22-snap.522-T1
Valid prediction for GlimmerHMM_glimmerT_49115-T1
Valid prediction for Augustus_model.g32778.t1
Valid prediction for GlimmerHMM_glimmerT_49111-T1
Valid prediction for snap_scaffold_22-snap.517-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22594, rend_intergenic: 18704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55931, rend_intergenic: 51409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69813, rend_intergenic: 66859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116499, rend_intergenic: 114157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157660, rend_intergenic: 156220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176190, rend_intergenic: 170954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182825
-exon list size: 273


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.5    
2.9    
3.3    
3.6    
4.0    
4.4    
4.7    
5.1    
5.5    
5.8    
6.2    
6.5    
6.9    
7.3    
7.6    
8.0    
8.4    
8.7    
9.1    
9.5    
9.8    
10.2    
10.5    
10.9    
11.3    
11.6    
12.0    
12.4    
12.7    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.3    
15.6    
16.0    
16.4    
16.7    
17.1    
17.5    
17.8    
18.2    
18.5    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.5    
21.8    
22.2    
22.5    
22.9    
23.3    
23.6    
24.0    
24.4    
24.7    
25.1    
25.5    
25.8    
26.2    
26.5    
26.9    
27.3    
27.6    
28.0    
28.4    
28.7    
29.1    
29.5    
29.8    
30.2    
30.5    
30.9    
31.3    
31.6    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.3    
35.6    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.5    
41.8    
42.2    
42.5    
42.9    
43.3    
43.6    
44.0    
44.4    
44.7    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.3    
47.6    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.4    
52.7    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.3    
55.6    
56.0    
56.4    
56.7    
57.1    
57.5    
57.8    
58.2    
58.5    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.4    
64.7    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.4    
68.7    
69.1    
69.5    
69.8    
70.2    
70.5    
70.9    
71.3    
71.6    
72.0    
72.4    
72.7    
73.1    
73.5    
73.8    
74.2    
74.5    
74.9    
75.3    
75.6    
76.0    
76.4    
76.7    
77.1    
77.5    
77.8    
78.2    
78.5    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.5    
81.8    
82.2    
82.5    
82.9    
83.3    
83.6    
84.0    
84.4    
84.7    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.3    
87.6    
88.0    
88.4    
88.7    
89.1    
89.5    
89.8    
90.2    
90.5    
90.9    
91.3    
91.6    
92.0    
92.4    
92.7    
93.1    
93.5    
93.8    
94.2    
94.5    
94.9    
95.3    
95.6    
96.0    
96.4    
96.7    
97.1    
97.5    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 22594, rend_intergenic: 18704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55931, rend_intergenic: 51409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69813, rend_intergenic: 66859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116499, rend_intergenic: 114157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157660, rend_intergenic: 156220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176190, rend_intergenic: 170954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 172600 - 182825
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support