-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_2559900-2643438

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.439-T1
Valid prediction for snap_scaffold_22-snap.433-T1
Valid prediction for GlimmerHMM_glimmerT_49056-T1
Valid prediction for snap_scaffold_22-snap.431-T1
Valid prediction for snap_scaffold_22-snap.425-T1
Valid prediction for snap_scaffold_22-snap.437-T1
Valid prediction for GlimmerHMM_glimmerT_49052-T1
Valid prediction for GlimmerHMM_glimmerT_49049-T1
Valid prediction for GlimmerHMM_glimmerT_49050-T1
Valid prediction for snap_scaffold_22-snap.432-T1
Valid prediction for GlimmerHMM_glimmerT_49059-T1
Valid prediction for snap_scaffold_22-snap.424-T1
Valid prediction for snap_scaffold_22-snap.429-T1
Valid prediction for snap_scaffold_22-snap.434-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.435-T1
Valid prediction for GlimmerHMM_glimmerT_49055-T1
Valid prediction for snap_scaffold_22-snap.427-T1
Valid prediction for snap_scaffold_22-snap.436-T1
Valid prediction for snap_scaffold_22-snap.426-T1
Valid prediction for Augustus_model.g32751.t1
Valid prediction for Augustus_model.g32752.t1
Valid prediction for snap_scaffold_22-snap.438-T1
Valid prediction for snap_scaffold_22-snap.428-T1
Valid prediction for snap_scaffold_22-snap.440-T1
Valid prediction for snap_scaffold_22-snap.430-T1
Valid prediction for GlimmerHMM_glimmerT_49053-T1
Valid prediction for GlimmerHMM_glimmerT_49057-T1
Valid prediction for GlimmerHMM_glimmerT_49051-T1
Valid prediction for Augustus_model.g32753.t1
Valid prediction for Augustus_model.g32754.t1
Valid prediction for Augustus_model.g32755.t1
Valid prediction for GlimmerHMM_glimmerT_49060-T1
Valid prediction for GlimmerHMM_glimmerT_49058-T1
Valid prediction for GlimmerHMM_glimmerT_49054-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18768, rend_intergenic: 11289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24171, rend_intergenic: 22952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31926, rend_intergenic: 25921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56349, rend_intergenic: 53507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65359, rend_intergenic: 64395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 83539
-exon list size: 106


building trellis

0.9    
1.9    
2.8    
3.7    
4.6    
5.6    
6.5    
7.4    
8.3    
9.3    
10.2    
11.1    
12.0    
13.0    
13.9    
14.8    
15.7    
16.7    
17.6    
18.5    
19.4    
20.4    
21.3    
22.2    
23.1    
24.1    
25.0    
25.9    
26.9    
27.8    
28.7    
29.6    
30.6    
31.5    
32.4    
33.3    
34.3    
35.2    
36.1    
37.0    
38.0    
38.9    
39.8    
40.7    
41.7    
42.6    
43.5    
44.4    
45.4    
46.3    
47.2    
48.1    
49.1    
50.0    
50.9    
51.9    
52.8    
53.7    
54.6    
55.6    
56.5    
57.4    
58.3    
59.3    
60.2    
61.1    
62.0    
63.0    
63.9    
64.8    
65.7    
66.7    
67.6    
68.5    
69.4    
70.4    
71.3    
72.2    
73.1    
74.1    
75.0    
75.9    
76.9    
77.8    
78.7    
79.6    
80.6    
81.5    
82.4    
83.3    
84.3    
85.2    
86.1    
87.0    
88.0    
88.9    
89.8    
90.7    
91.7    
92.6    
93.5    
94.4    
95.4    
96.3    
97.2    
98.1    
99.1    
-found 12 predictions from path traversal
Error with prediction: snap lend_intergenic: 18768, rend_intergenic: 11289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24171, rend_intergenic: 22952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31926, rend_intergenic: 25921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56349, rend_intergenic: 53507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65359, rend_intergenic: 64395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 70409 - 83539
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 70409 - 82701
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support