-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_2065284-2352331

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g32742.t1
Valid prediction for snap_scaffold_22-snap.365-T1
Valid prediction for GlimmerHMM_glimmerT_49024-T1
Valid prediction for GlimmerHMM_glimmerT_49023-T1
Valid prediction for snap_scaffold_22-snap.377-T1
Valid prediction for GlimmerHMM_glimmerT_49022-T1
Valid prediction for snap_scaffold_22-snap.381-T1
Valid prediction for GlimmerHMM_glimmerT_49012-T1
Valid prediction for snap_scaffold_22-snap.383-T1
Valid prediction for Augustus_model.g32726.t1
Valid prediction for snap_scaffold_22-snap.354-T1
Valid prediction for GlimmerHMM_glimmerT_49013-T1
Valid prediction for GlimmerHMM_glimmerT_49020-T1
Valid prediction for GlimmerHMM_glimmerT_49025-T1
Valid prediction for snap_scaffold_22-snap.385-T1
Valid prediction for snap_scaffold_22-snap.351-T1
Valid prediction for snap_scaffold_22-snap.357-T1
Valid prediction for snap_scaffold_22-snap.348-T1
Valid prediction for snap_scaffold_22-snap.389-T1
Valid prediction for GlimmerHMM_glimmerT_49018-T1
Valid prediction for snap_scaffold_22-snap.344-T1
Valid prediction for GlimmerHMM_glimmerT_49015-T1
Valid prediction for GlimmerHMM_glimmerT_49017-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g32734.t1
Valid prediction for Augustus_model.g32743.t1
Valid prediction for snap_scaffold_22-snap.346-T1
Valid prediction for Augustus_model.g32732.t1
Valid prediction for snap_scaffold_22-snap.353-T1
Valid prediction for Augustus_model.g32741.t1
Valid prediction for snap_scaffold_22-snap.342-T1
Valid prediction for Augustus_model.g32735.t1
Valid prediction for snap_scaffold_22-snap.368-T1
Valid prediction for Augustus_model.g32728.t1
Valid prediction for snap_scaffold_22-snap.356-T1
Valid prediction for snap_scaffold_22-snap.378-T1
Valid prediction for Augustus_model.g32729.t1
Valid prediction for Augustus_model.g32730.t1
Valid prediction for GlimmerHMM_glimmerT_49010-T1
Valid prediction for Augustus_model.g32724.t1
Valid prediction for snap_scaffold_22-snap.369-T1
Valid prediction for snap_scaffold_22-snap.341-T1
Valid prediction for GlimmerHMM_glimmerT_49019-T1
Valid prediction for snap_scaffold_22-snap.343-T1
Valid prediction for snap_scaffold_22-snap.384-T1
Valid prediction for snap_scaffold_22-snap.376-T1
Valid prediction for snap_scaffold_22-snap.345-T1
Valid prediction for Augustus_model.g32739.t1
Valid prediction for snap_scaffold_22-snap.352-T1
Valid prediction for snap_scaffold_22-snap.370-T1
Valid prediction for snap_scaffold_22-snap.362-T1
Valid prediction for snap_scaffold_22-snap.367-T1
Valid prediction for Augustus_model.g32727.t1
Valid prediction for snap_scaffold_22-snap.388-T1
Valid prediction for snap_scaffold_22-snap.371-T1
Valid prediction for GlimmerHMM_glimmerT_49021-T1
Valid prediction for snap_scaffold_22-snap.366-T1
Valid prediction for Augustus_model.g32733.t1
Valid prediction for snap_scaffold_22-snap.390-T1
Valid prediction for snap_scaffold_22-snap.350-T1
Valid prediction for Augustus_model.g32725.t1
Valid prediction for Augustus_model.g32736.t1
Valid prediction for GlimmerHMM_glimmerT_49009-T1
Valid prediction for snap_scaffold_22-snap.359-T1
Valid prediction for GlimmerHMM_glimmerT_49011-T1
Valid prediction for Augustus_model.g32737.t1
Valid prediction for snap_scaffold_22-snap.379-T1
Valid prediction for snap_scaffold_22-snap.363-T1
Valid prediction for snap_scaffold_22-snap.360-T1
Valid prediction for snap_scaffold_22-snap.382-T1
Valid prediction for snap_scaffold_22-snap.380-T1
Valid prediction for snap_scaffold_22-snap.364-T1
Valid prediction for snap_scaffold_22-snap.349-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g32740.t1
Valid prediction for snap_scaffold_22-snap.358-T1
Valid prediction for Augustus_model.g32731.t1
Valid prediction for snap_scaffold_22-snap.347-T1
Valid prediction for GlimmerHMM_glimmerT_49026-T1
Valid prediction for snap_scaffold_22-snap.355-T1
Valid prediction for snap_scaffold_22-snap.374-T1
Valid prediction for Augustus_model.g32723.t1
Valid prediction for snap_scaffold_22-snap.372-T1
Valid prediction for snap_scaffold_22-snap.361-T1
Valid prediction for GlimmerHMM_glimmerT_49016-T1
Valid prediction for Augustus_model.g32738.t1
Valid prediction for snap_scaffold_22-snap.375-T1
Valid prediction for GlimmerHMM_glimmerT_49014-T1
Valid prediction for snap_scaffold_22-snap.387-T1
Valid prediction for snap_scaffold_22-snap.373-T1
Valid prediction for snap_scaffold_22-snap.386-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 32162, rend_intergenic: 27087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51089, rend_intergenic: 48608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156651, rend_intergenic: 154781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243540, rend_intergenic: 239249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282265, rend_intergenic: 279827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 287048
-exon list size: 298


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.3    
10.7    
11.0    
11.3    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.3    
18.7    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.7    
23.0    
23.3    
23.7    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.7    
30.0    
30.3    
30.7    
31.0    
31.3    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.3    
41.7    
42.0    
42.3    
42.7    
43.0    
43.3    
43.7    
44.0    
44.3    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.7    
56.0    
56.3    
56.7    
57.0    
57.3    
57.7    
58.0    
58.3    
58.7    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.7    
69.0    
69.3    
69.7    
70.0    
70.3    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.3    
76.7    
77.0    
77.3    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.3    
81.7    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.7    
89.0    
89.3    
89.7    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 32162, rend_intergenic: 27087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51089, rend_intergenic: 48608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156651, rend_intergenic: 154781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243540, rend_intergenic: 239249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282265, rend_intergenic: 279827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 265953 - 287048
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 265953 - 282623
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support