-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_1835577-2076947

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_48989-T1
Valid prediction for snap_scaffold_22-snap.322-T1
Valid prediction for snap_scaffold_22-snap.317-T1
Valid prediction for GlimmerHMM_glimmerT_48979-T1
Valid prediction for GlimmerHMM_glimmerT_49003-T1
Valid prediction for GlimmerHMM_glimmerT_48982-T1
Valid prediction for CodingQuarry_transcript_34112-T1
Valid prediction for GlimmerHMM_glimmerT_49001-T1
Valid prediction for snap_scaffold_22-snap.319-T1
Valid prediction for Augustus_model.g32717.t1
Valid prediction for GlimmerHMM_glimmerT_48992-T1
Valid prediction for snap_scaffold_22-snap.340-T1
Valid prediction for Augustus_model.g32708.t1
Valid prediction for GlimmerHMM_glimmerT_48990-T1
Valid prediction for Augustus_model.g32709.t1
Valid prediction for GlimmerHMM_glimmerT_48996-T1
Valid prediction for snap_scaffold_22-snap.316-T1
Valid prediction for Augustus_model.g32716.t1
Valid prediction for GlimmerHMM_glimmerT_49005-T1
Valid prediction for snap_scaffold_22-snap.325-T1
Valid prediction for GlimmerHMM_glimmerT_48999-T1
Valid prediction for Augustus_model.g32713.t1
Valid prediction for GlimmerHMM_glimmerT_48986-T1
Valid prediction for snap_scaffold_22-snap.333-T1
Valid prediction for GlimmerHMM_glimmerT_48997-T1
Valid prediction for GlimmerHMM_glimmerT_48988-T1
Valid prediction for Augustus_model.g32711.t1
Valid prediction for GlimmerHMM_glimmerT_49007-T1
Valid prediction for snap_scaffold_22-snap.318-T1
Valid prediction for snap_scaffold_22-snap.315-T1
Valid prediction for snap_scaffold_22-snap.334-T1
Valid prediction for GlimmerHMM_glimmerT_49004-T1
Valid prediction for GlimmerHMM_glimmerT_48981-T1
Valid prediction for snap_scaffold_22-snap.335-T1
Valid prediction for snap_scaffold_22-snap.323-T1
Valid prediction for Augustus_model.g32707.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.338-T1
Valid prediction for Augustus_model.g32722.t1
Valid prediction for snap_scaffold_22-snap.339-T1
Valid prediction for Augustus_model.g32720.t1
Valid prediction for Augustus_model.g32710.t1
Valid prediction for snap_scaffold_22-snap.331-T1
Valid prediction for snap_scaffold_22-snap.321-T1
Valid prediction for GlimmerHMM_glimmerT_48995-T1
Valid prediction for snap_scaffold_22-snap.328-T1
Valid prediction for GlimmerHMM_glimmerT_48991-T1
Valid prediction for GlimmerHMM_glimmerT_49000-T1
Valid prediction for snap_scaffold_22-snap.337-T1
Valid prediction for GlimmerHMM_glimmerT_48987-T1
Valid prediction for Augustus_model.g32719.t1
Valid prediction for Augustus_model.g32714.t1
Valid prediction for GlimmerHMM_glimmerT_48983-T1
Valid prediction for Augustus_model.g32718.t1
Valid prediction for HiQ_model.g32715.t1
Valid prediction for snap_scaffold_22-snap.326-T1
Valid prediction for Augustus_model.g32721.t1
Valid prediction for CodingQuarry_transcript_34113-T1
Valid prediction for snap_scaffold_22-snap.324-T1
Valid prediction for snap_scaffold_22-snap.341-T1
Valid prediction for pasa_asmbl_29153.p1
Valid prediction for GlimmerHMM_glimmerT_48994-T1
Valid prediction for snap_scaffold_22-snap.329-T1
Valid prediction for Augustus_model.g32712.t1
Valid prediction for GlimmerHMM_glimmerT_49006-T1
Valid prediction for GlimmerHMM_glimmerT_48984-T1
Valid prediction for snap_scaffold_22-snap.336-T1
Valid prediction for GlimmerHMM_glimmerT_48993-T1
Valid prediction for GlimmerHMM_glimmerT_48985-T1
Valid prediction for snap_scaffold_22-snap.342-T1
Valid prediction for snap_scaffold_22-snap.327-T1
Valid prediction for snap_scaffold_22-snap.314-T1
Valid prediction for snap_scaffold_22-snap.332-T1
Valid prediction for GlimmerHMM_glimmerT_48998-T1
Valid prediction for GlimmerHMM_glimmerT_49002-T1
Valid prediction for snap_scaffold_22-snap.320-T1
Valid prediction for GlimmerHMM_glimmerT_48980-T1
Valid prediction for snap_scaffold_22-snap.330-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 203923, rend_intergenic: 200858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231249, rend_intergenic: 226419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 241371
-exon list size: 206


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.8    
4.3    
4.8    
5.3    
5.8    
6.2    
6.7    
7.2    
7.7    
8.2    
8.7    
9.1    
9.6    
10.1    
10.6    
11.1    
11.5    
12.0    
12.5    
13.0    
13.5    
13.9    
14.4    
14.9    
15.4    
15.9    
16.3    
16.8    
17.3    
17.8    
18.3    
18.8    
19.2    
19.7    
20.2    
20.7    
21.2    
21.6    
22.1    
22.6    
23.1    
23.6    
24.0    
24.5    
25.0    
25.5    
26.0    
26.4    
26.9    
27.4    
27.9    
28.4    
28.8    
29.3    
29.8    
30.3    
30.8    
31.2    
31.7    
32.2    
32.7    
33.2    
33.7    
34.1    
34.6    
35.1    
35.6    
36.1    
36.5    
37.0    
37.5    
38.0    
38.5    
38.9    
39.4    
39.9    
40.4    
40.9    
41.3    
41.8    
42.3    
42.8    
43.3    
43.8    
44.2    
44.7    
45.2    
45.7    
46.2    
46.6    
47.1    
47.6    
48.1    
48.6    
49.0    
49.5    
50.0    
50.5    
51.0    
51.4    
51.9    
52.4    
52.9    
53.4    
53.8    
54.3    
54.8    
55.3    
55.8    
56.2    
56.7    
57.2    
57.7    
58.2    
58.7    
59.1    
59.6    
60.1    
60.6    
61.1    
61.5    
62.0    
62.5    
63.0    
63.5    
63.9    
64.4    
64.9    
65.4    
65.9    
66.3    
66.8    
67.3    
67.8    
68.3    
68.8    
69.2    
69.7    
70.2    
70.7    
71.2    
71.6    
72.1    
72.6    
73.1    
73.6    
74.0    
74.5    
75.0    
75.5    
76.0    
76.4    
76.9    
77.4    
77.9    
78.4    
78.8    
79.3    
79.8    
80.3    
80.8    
81.2    
81.7    
82.2    
82.7    
83.2    
83.7    
84.1    
84.6    
85.1    
85.6    
86.1    
86.5    
87.0    
87.5    
88.0    
88.5    
88.9    
89.4    
89.9    
90.4    
90.9    
91.3    
91.8    
92.3    
92.8    
93.3    
93.8    
94.2    
94.7    
95.2    
95.7    
96.2    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 203923, rend_intergenic: 200858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231249, rend_intergenic: 226419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support