-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_1257892-1578978

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g32687.t1
Valid prediction for snap_scaffold_22-snap.258-T1
Valid prediction for snap_scaffold_22-snap.261-T1
Valid prediction for GlimmerHMM_glimmerT_48953-T1
Valid prediction for GlimmerHMM_glimmerT_48952-T1
Valid prediction for GlimmerHMM_glimmerT_48951-T1
Valid prediction for GlimmerHMM_glimmerT_48945-T1
Valid prediction for snap_scaffold_22-snap.263-T1
Valid prediction for snap_scaffold_22-snap.255-T1
Valid prediction for snap_scaffold_22-snap.249-T1
Valid prediction for snap_scaffold_22-snap.245-T1
Valid prediction for snap_scaffold_22-snap.274-T1
Valid prediction for snap_scaffold_22-snap.251-T1
Valid prediction for snap_scaffold_22-snap.259-T1
Valid prediction for snap_scaffold_22-snap.253-T1
Valid prediction for snap_scaffold_22-snap.272-T1
Valid prediction for GlimmerHMM_glimmerT_48936-T1
Valid prediction for Augustus_model.g32683.t1
Valid prediction for Augustus_model.g32686.t1
Valid prediction for snap_scaffold_22-snap.266-T1
Valid prediction for GlimmerHMM_glimmerT_48941-T1
Valid prediction for GlimmerHMM_glimmerT_48943-T1
Valid prediction for GlimmerHMM_glimmerT_48937-T1
Valid prediction for snap_scaffold_22-snap.265-T1
Valid prediction for GlimmerHMM_glimmerT_48955-T1
Valid prediction for GlimmerHMM_glimmerT_48944-T1
Valid prediction for GlimmerHMM_glimmerT_48938-T1
Valid prediction for snap_scaffold_22-snap.242-T1
Valid prediction for snap_scaffold_22-snap.256-T1
Valid prediction for snap_scaffold_22-snap.262-T1
Valid prediction for GlimmerHMM_glimmerT_48948-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.246-T1
Valid prediction for GlimmerHMM_glimmerT_48950-T1
Valid prediction for snap_scaffold_22-snap.268-T1
Valid prediction for snap_scaffold_22-snap.264-T1
Valid prediction for Augustus_model.g32684.t1
Valid prediction for snap_scaffold_22-snap.244-T1
Valid prediction for Augustus_model.g32685.t1
Valid prediction for GlimmerHMM_glimmerT_48940-T1
Valid prediction for GlimmerHMM_glimmerT_48949-T1
Valid prediction for snap_scaffold_22-snap.269-T1
Valid prediction for GlimmerHMM_glimmerT_48935-T1
Valid prediction for GlimmerHMM_glimmerT_48947-T1
Valid prediction for snap_scaffold_22-snap.250-T1
Valid prediction for GlimmerHMM_glimmerT_48956-T1
Valid prediction for snap_scaffold_22-snap.243-T1
Valid prediction for GlimmerHMM_glimmerT_48933-T1
Valid prediction for snap_scaffold_22-snap.252-T1
Valid prediction for snap_scaffold_22-snap.248-T1
Valid prediction for snap_scaffold_22-snap.254-T1
Valid prediction for snap_scaffold_22-snap.271-T1
Valid prediction for Augustus_model.g32682.t1
Valid prediction for GlimmerHMM_glimmerT_48942-T1
Valid prediction for GlimmerHMM_glimmerT_48939-T1
Valid prediction for GlimmerHMM_glimmerT_48954-T1
Valid prediction for GlimmerHMM_glimmerT_48934-T1
Valid prediction for GlimmerHMM_glimmerT_48957-T1
Valid prediction for snap_scaffold_22-snap.267-T1
Valid prediction for snap_scaffold_22-snap.247-T1
Valid prediction for snap_scaffold_22-snap.270-T1
Valid prediction for snap_scaffold_22-snap.260-T1
Valid prediction for Augustus_model.g32689.t1
Valid prediction for snap_scaffold_22-snap.273-T1
Valid prediction for Augustus_model.g32681.t1
Valid prediction for snap_scaffold_22-snap.257-T1
Valid prediction for GlimmerHMM_glimmerT_48946-T1
Valid prediction for Augustus_model.g32688.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9000, rend_intergenic: 6325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13597, rend_intergenic: 12269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44682, rend_intergenic: 40899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55869, rend_intergenic: 54216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62133, rend_intergenic: 61861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181494, rend_intergenic: 178274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 321087
-exon list size: 212


building trellis

0.5    
0.9    
1.4    
1.9    
2.3    
2.8    
3.3    
3.7    
4.2    
4.7    
5.1    
5.6    
6.1    
6.5    
7.0    
7.5    
7.9    
8.4    
8.9    
9.3    
9.8    
10.3    
10.7    
11.2    
11.7    
12.1    
12.6    
13.1    
13.6    
14.0    
14.5    
15.0    
15.4    
15.9    
16.4    
16.8    
17.3    
17.8    
18.2    
18.7    
19.2    
19.6    
20.1    
20.6    
21.0    
21.5    
22.0    
22.4    
22.9    
23.4    
23.8    
24.3    
24.8    
25.2    
25.7    
26.2    
26.6    
27.1    
27.6    
28.0    
28.5    
29.0    
29.4    
29.9    
30.4    
30.8    
31.3    
31.8    
32.2    
32.7    
33.2    
33.6    
34.1    
34.6    
35.0    
35.5    
36.0    
36.4    
36.9    
37.4    
37.9    
38.3    
38.8    
39.3    
39.7    
40.2    
40.7    
41.1    
41.6    
42.1    
42.5    
43.0    
43.5    
43.9    
44.4    
44.9    
45.3    
45.8    
46.3    
46.7    
47.2    
47.7    
48.1    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.9    
52.3    
52.8    
53.3    
53.7    
54.2    
54.7    
55.1    
55.6    
56.1    
56.5    
57.0    
57.5    
57.9    
58.4    
58.9    
59.3    
59.8    
60.3    
60.7    
61.2    
61.7    
62.1    
62.6    
63.1    
63.6    
64.0    
64.5    
65.0    
65.4    
65.9    
66.4    
66.8    
67.3    
67.8    
68.2    
68.7    
69.2    
69.6    
70.1    
70.6    
71.0    
71.5    
72.0    
72.4    
72.9    
73.4    
73.8    
74.3    
74.8    
75.2    
75.7    
76.2    
76.6    
77.1    
77.6    
78.0    
78.5    
79.0    
79.4    
79.9    
80.4    
80.8    
81.3    
81.8    
82.2    
82.7    
83.2    
83.6    
84.1    
84.6    
85.0    
85.5    
86.0    
86.4    
86.9    
87.4    
87.9    
88.3    
88.8    
89.3    
89.7    
90.2    
90.7    
91.1    
91.6    
92.1    
92.5    
93.0    
93.5    
93.9    
94.4    
94.9    
95.3    
95.8    
96.3    
96.7    
97.2    
97.7    
98.1    
98.6    
99.1    
99.5    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 9000, rend_intergenic: 6325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13597, rend_intergenic: 12269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44682, rend_intergenic: 40899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55869, rend_intergenic: 54216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62133, rend_intergenic: 61861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181494, rend_intergenic: 178274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support