-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_10967121-11251558

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.2266-T1
Valid prediction for snap_scaffold_22-snap.2279-T1
Couldn't classify 72231, 72362
Sorry, prediction pasa_asmbl_30369.p1 fails validation.
(GCC)	 AG	72231-72362	GT	AGG
(AGC)	 AG	72508-72654	GT	CCG
(GTG)	 AG	73448-73585	AG	AGA
-recovered pasa_asmbl_30369.p1, terminal, 73448, 73585
-recovered pasa_asmbl_30369.p1, internal, 72231, 72362
-recovered pasa_asmbl_30369.p1, internal, 72508, 72654
Valid prediction for Augustus_model.g33499.t1
Valid prediction for Augustus_model.g33507.t1
Valid prediction for snap_scaffold_22-snap.2242-T1
Valid prediction for snap_scaffold_22-snap.2273-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_22-snap.2238-T1
Valid prediction for GlimmerHMM_glimmerT_50218-T1
Valid prediction for snap_scaffold_22-snap.2278-T1
Valid prediction for snap_scaffold_22-snap.2285-T1
Valid prediction for snap_scaffold_22-snap.2281-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_50209-T1
Couldn't classify 266474, 266517
Couldn't classify 267153, 267255
Sorry, prediction CodingQuarry_transcript_34293-T1 fails validation.
(ATG)	 AG	266474-266517	CG	CAC
(AGA)	 AC	267153-267255	CC	GAC
Valid prediction for snap_scaffold_22-snap.2235-T1
Valid prediction for GlimmerHMM_glimmerT_50232-T1
Valid prediction for snap_scaffold_22-snap.2244-T1
Valid prediction for Augustus_model.g33504.t1
Valid prediction for snap_scaffold_22-snap.2253-T1
Valid prediction for GlimmerHMM_glimmerT_50223-T1
Valid prediction for snap_scaffold_22-snap.2256-T1
Valid prediction for snap_scaffold_22-snap.2237-T1
Valid prediction for snap_scaffold_22-snap.2260-T1
Valid prediction for GlimmerHMM_glimmerT_50215-T1
Valid prediction for snap_scaffold_22-snap.2249-T1
Valid prediction for Augustus_model.g33520.t1
Valid prediction for Augustus_model.g33503.t1
Valid prediction for GlimmerHMM_glimmerT_50226-T1
Valid prediction for Augustus_model.g33506.t1
Valid prediction for snap_scaffold_22-snap.2251-T1
Valid prediction for Augustus_model.g33512.t1
Valid prediction for snap_scaffold_22-snap.2284-T1
Couldn't classify 265232, 265454
Sorry, prediction pasa_asmbl_30372.p1 fails validation.
(ATG)	 AG	264339-264430	GT	AGG
(CGC)	 AG	265232-265454	TG	TGT
-recovered pasa_asmbl_30372.p1, initial, 264339, 264430
-recovered pasa_asmbl_30372.p1, internal, 264339, 264430
Valid prediction for snap_scaffold_22-snap.2233-T1
Valid prediction for Augustus_model.g33521.t1
Couldn't classify 67018, 67119
Sorry, prediction pasa_asmbl_30468.p2 fails validation.
(ATG)	 CC	66043-66203	GT	AGG
(GGA)	 AG	66587-66725	GT	AGG
(GTG)	 AG	67018-67119	GA	GAG
-recovered pasa_asmbl_30468.p2, initial, 66043, 66203
-recovered pasa_asmbl_30468.p2, internal, 66587, 66725
Valid prediction for GlimmerHMM_glimmerT_50206-T1
Valid prediction for snap_scaffold_22-snap.2262-T1
Valid prediction for snap_scaffold_22-snap.2276-T1
Valid prediction for GlimmerHMM_glimmerT_50212-T1
Valid prediction for Augustus_model.g33508.t1
Couldn't classify 101242, 101348
Couldn't classify 104349, 104461
Sorry, prediction pasa_asmbl_30470.p1 fails validation.
(TCC)	 CT	101242-101348	GT	AGG
(AAG)	 AG	101819-101909	GT	AGG
(GTA)	 AG	103899-103977	GT	GGG
(GCG)	 AG	104349-104461	GT	AGG
-recovered pasa_asmbl_30470.p1, internal, 101819, 101909
-recovered pasa_asmbl_30470.p1, internal, 103899, 103977
-recovered pasa_asmbl_30470.p1, internal, 104349, 104461
Valid prediction for snap_scaffold_22-snap.2255-T1
Valid prediction for snap_scaffold_22-snap.2261-T1
Valid prediction for Augustus_model.g33502.t1
Couldn't classify 33222, 33269
Couldn't classify 35249, 35527
Sorry, prediction pasa_asmbl_30368.p1 fails validation.
(GTG)	 GT	33222-33269	GT	AGG
(GTA)	 AG	35249-35527	CA	AGC
Valid prediction for GlimmerHMM_glimmerT_50233-T1
Valid prediction for snap_scaffold_22-snap.2241-T1
Valid prediction for GlimmerHMM_glimmerT_50213-T1
Valid prediction for Augustus_model.g33511.t1
Valid prediction for snap_scaffold_22-snap.2259-T1
Valid prediction for Augustus_model.g33515.t1
Valid prediction for snap_scaffold_22-snap.2269-T1
Couldn't classify 105914, 106090
Couldn't classify 106383, 106514
Sorry, prediction pasa_asmbl_30445.p2 fails validation.
(AGG)	 TC	105914-106090	GT	AGG
(GTG)	 AG	106383-106514	GC	TAG
-recovered pasa_asmbl_30445.p2, internal, 106383, 106514
Valid prediction for snap_scaffold_22-snap.2280-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 45048, 45872
Sorry, prediction pasa_asmbl_29655.p1 fails validation.
(ATG)	 GC	45048-45872	GA	CAG
Valid prediction for snap_scaffold_22-snap.2282-T1
Valid prediction for snap_scaffold_22-snap.2283-T1
Valid prediction for GlimmerHMM_glimmerT_50224-T1
Valid prediction for CodingQuarry_transcript_34289-T1
Valid prediction for snap_scaffold_22-snap.2236-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_50220-T1
Valid prediction for Augustus_model.g33519.t1
Valid prediction for GlimmerHMM_glimmerT_50214-T1
Valid prediction for GlimmerHMM_glimmerT_50229-T1
Valid prediction for snap_scaffold_22-snap.2257-T1
Valid prediction for snap_scaffold_22-snap.2258-T1
Valid prediction for CodingQuarry_transcript_34291-T1
Valid prediction for Augustus_model.g33505.t1
Valid prediction for snap_scaffold_22-snap.2275-T1
Valid prediction for Augustus_model.g33500.t1
Valid prediction for snap_scaffold_22-snap.2274-T1
Valid prediction for snap_scaffold_22-snap.2264-T1
Valid prediction for snap_scaffold_22-snap.2248-T1
Valid prediction for GlimmerHMM_glimmerT_50222-T1
Valid prediction for GlimmerHMM_glimmerT_50228-T1
Valid prediction for Augustus_model.g33516.t1
Couldn't classify 264808, 264974
Sorry, prediction pasa_asmbl_29635.p1 fails validation.
(GCC)	 CA	264808-264974	GT	AGG
(GTC)	 AG	265068-265245	GT	TGG
(AAA)	 AG	265589-265840	GT	AGG
(CCT)	 AG	265931-265989	GT	AGG
(TGG)	 AG	266263-266521	GT	AGG
(GAG)	 AG	267066-267240	GT	AGG
(CTC)	 AG	267450-267541	GT	AGG
(GCT)	 AG	267627-267737	GG	GAG
add_exon() Sorry, pasa_asmbl_29635.p1 265931-265989-terminal-2 is invalid.
-recovered pasa_asmbl_29635.p1, terminal, 265931, 265989
-recovered pasa_asmbl_29635.p1, terminal, 267627, 267737
-recovered pasa_asmbl_29635.p1, internal, 265068, 265245
-recovered pasa_asmbl_29635.p1, internal, 265589, 265840
-recovered pasa_asmbl_29635.p1, internal, 265931, 265989
-recovered pasa_asmbl_29635.p1, internal, 266263, 266521
-recovered pasa_asmbl_29635.p1, internal, 267066, 267240
-recovered pasa_asmbl_29635.p1, internal, 267450, 267541
Valid prediction for snap_scaffold_22-snap.2254-T1
Valid prediction for GlimmerHMM_glimmerT_50219-T1
Valid prediction for snap_scaffold_22-snap.2270-T1
Valid prediction for GlimmerHMM_glimmerT_50216-T1
Valid prediction for snap_scaffold_22-snap.2267-T1
Valid prediction for Augustus_model.g33514.t1
Valid prediction for snap_scaffold_22-snap.2268-T1
Valid prediction for GlimmerHMM_glimmerT_50207-T1
Couldn't classify 95986, 96100
Sorry, prediction pasa_asmbl_29650.p1 fails validation.
(CTC)	 CT	95986-96100	GT	ATG
(TGC)	 AG	98785-98898	GT	AGG
(CTA)	 AG	99096-99319	CT	AGC
add_exon() Sorry, pasa_asmbl_29650.p1 98785-98898-terminal-1 is invalid.
-recovered pasa_asmbl_29650.p1, terminal, 98785, 98898
-recovered pasa_asmbl_29650.p1, terminal, 99096, 99319
-recovered pasa_asmbl_29650.p1, internal, 98785, 98898
Couldn't classify 130875, 131096
Couldn't classify 131346, 131513
Sorry, prediction pasa_asmbl_29644.p1 fails validation.
(AGC)	 AG	130875-131096	GT	ATG
(GTA)	 AG	131346-131513	AC	ACA
-recovered pasa_asmbl_29644.p1, internal, 130875, 131096
Valid prediction for Augustus_model.g33517.t1
Valid prediction for snap_scaffold_22-snap.2263-T1
Couldn't classify 222672, 222983
Sorry, prediction pasa_asmbl_29643.p2 fails validation.
(AAG)	 GC	222672-222983	CC	GAC
Valid prediction for snap_scaffold_22-snap.2265-T1
Valid prediction for snap_scaffold_22-snap.2287-T1
Couldn't classify 50294, 50466
Sorry, prediction pasa_asmbl_29653.p1 fails validation.
(ATG)	 GG	48868-48973	GT	CGG
(AAT)	 AG	49314-49445	GT	AGG
(GTT)	 AG	50294-50466	AT	AAA
-recovered pasa_asmbl_29653.p1, initial, 48868, 48973
-recovered pasa_asmbl_29653.p1, internal, 49314, 49445
Valid prediction for snap_scaffold_22-snap.2271-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for HiQ_model.g33510.t1
Valid prediction for snap_scaffold_22-snap.2277-T1
Valid prediction for snap_scaffold_22-snap.2234-T1
Valid prediction for GlimmerHMM_glimmerT_50221-T1
Valid prediction for GlimmerHMM_glimmerT_50211-T1
Valid prediction for snap_scaffold_22-snap.2286-T1
Valid prediction for pasa_asmbl_29652.p1
Valid prediction for snap_scaffold_22-snap.2245-T1
Valid prediction for GlimmerHMM_glimmerT_50205-T1
Valid prediction for GlimmerHMM_glimmerT_50230-T1
Valid prediction for GlimmerHMM_glimmerT_50227-T1
Valid prediction for Augustus_model.g33501.t1
Valid prediction for Augustus_model.g33509.t1
Valid prediction for GlimmerHMM_glimmerT_50217-T1
Valid prediction for HiQ_model.g33513.t1
Valid prediction for Augustus_model.g33518.t1
Valid prediction for CodingQuarry_transcript_34287-T1
Valid prediction for snap_scaffold_22-snap.2252-T1
Valid prediction for snap_scaffold_22-snap.2240-T1
Valid prediction for GlimmerHMM_glimmerT_50231-T1
Valid prediction for snap_scaffold_22-snap.2232-T1
Valid prediction for snap_scaffold_22-snap.2239-T1
Valid prediction for snap_scaffold_22-snap.2272-T1
Couldn't classify 46284, 46924
Couldn't classify 47078, 48287
Sorry, prediction pasa_asmbl_29654.p1 fails validation.
(GGT)	 GT	46284-46924	GT	AGG
(CAG)	 AG	47078-48287	AC	TGA
Valid prediction for GlimmerHMM_glimmerT_50225-T1
Valid prediction for Augustus_model.g33522.t1
Valid prediction for snap_scaffold_22-snap.2250-T1
Valid prediction for snap_scaffold_22-snap.2243-T1
Valid prediction for GlimmerHMM_glimmerT_50210-T1
Valid prediction for GlimmerHMM_glimmerT_50208-T1
Valid prediction for CodingQuarry_transcript_34292-T1
Valid prediction for CodingQuarry_transcript_34290-T1
Valid prediction for CodingQuarry_transcript_34286-T1
Couldn't classify 32694, 32882
Couldn't classify 33336, 33428
Sorry, prediction pasa_asmbl_29747.p1 fails validation.
(GCC)	 AT	32694-32882	GT	AGG
(CTT)	 AG	33102-33221	GT	TGG
(ATG)	 AG	33336-33428	AG	ACA
-recovered pasa_asmbl_29747.p1, internal, 33102, 33221
Couldn't classify 221109, 221156
Sorry, prediction pasa_asmbl_29751.p2 fails validation.
(ATG)	 GG	219854-219937	GT	GAG
(ATC)	 AG	220217-220281	GT	ACG
(TGC)	 AG	220479-220614	GT	AGG
(GGT)	 AG	221109-221156	GA	AGG
-recovered pasa_asmbl_29751.p2, initial, 219854, 219937
-recovered pasa_asmbl_29751.p2, internal, 220217, 220281
-recovered pasa_asmbl_29751.p2, internal, 220479, 220614
Valid prediction for snap_scaffold_22-snap.2246-T1
Valid prediction for Augustus_model.g33498.t1
Valid prediction for pasa_asmbl_29645.p1
Valid prediction for GlimmerHMM_glimmerT_50234-T1
Valid prediction for snap_scaffold_22-snap.2247-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15749, rend_intergenic: 15069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20849, rend_intergenic: 16702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26507, rend_intergenic: 20884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35517, rend_intergenic: 27885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49245, rend_intergenic: 35581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59009, rend_intergenic: 50163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64776, rend_intergenic: 60371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91287, rend_intergenic: 66924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99978, rend_intergenic: 95521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111427, rend_intergenic: 101847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113405, rend_intergenic: 111431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125354, rend_intergenic: 113449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128846, rend_intergenic: 126384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132718, rend_intergenic: 129065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147715, rend_intergenic: 133070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161893, rend_intergenic: 148725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175524, rend_intergenic: 163071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184820, rend_intergenic: 176740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194787, rend_intergenic: 184921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229401, rend_intergenic: 194826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231497, rend_intergenic: 229505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240770, rend_intergenic: 231555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 262826, rend_intergenic: 246323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267269, rend_intergenic: 264203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274781, rend_intergenic: 268235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282026, rend_intergenic: 277753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 284438
-exon list size: 597


building trellis

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56.3    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
57.9    
58.1    
58.3    
58.4    
58.6    
58.8    
58.9    
59.1    
59.3    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.8    
60.9    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
63.9    
64.1    
64.3    
64.4    
64.6    
64.8    
64.9    
65.1    
65.3    
65.4    
65.6    
65.8    
65.9    
66.1    
66.3    
66.4    
66.6    
66.8    
66.9    
67.1    
67.3    
67.4    
67.6    
67.8    
67.9    
68.1    
68.3    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.4    
69.6    
69.8    
69.9    
70.1    
70.3    
70.5    
70.6    
70.8    
71.0    
71.1    
71.3    
71.5    
71.6    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
73.0    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.6    
76.8    
77.0    
77.1    
77.3    
77.5    
77.6    
77.8    
78.0    
78.1    
78.3    
78.5    
78.6    
78.8    
79.0    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.6    
80.8    
81.0    
81.1    
81.3    
81.5    
81.6    
81.8    
82.0    
82.1    
82.3    
82.5    
82.6    
82.8    
83.0    
83.1    
83.3    
83.5    
83.6    
83.8    
84.0    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 15749, rend_intergenic: 15069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20849, rend_intergenic: 16702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26507, rend_intergenic: 20884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35517, rend_intergenic: 27885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49245, rend_intergenic: 35581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59009, rend_intergenic: 50163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64776, rend_intergenic: 60371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91287, rend_intergenic: 66924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99978, rend_intergenic: 95521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111427, rend_intergenic: 101847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113405, rend_intergenic: 111431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125354, rend_intergenic: 113449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128846, rend_intergenic: 126384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132718, rend_intergenic: 129065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147715, rend_intergenic: 133070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161893, rend_intergenic: 148725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175524, rend_intergenic: 163071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184820, rend_intergenic: 176740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194787, rend_intergenic: 184921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229401, rend_intergenic: 194826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231497, rend_intergenic: 229505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240770, rend_intergenic: 231555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 262826, rend_intergenic: 246323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267269, rend_intergenic: 264203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274781, rend_intergenic: 268235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282026, rend_intergenic: 277753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16701
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support