-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_1054856-1263988

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.238-T1
Valid prediction for snap_scaffold_22-snap.240-T1
Valid prediction for snap_scaffold_22-snap.236-T1
Valid prediction for GlimmerHMM_glimmerT_48928-T1
Valid prediction for snap_scaffold_22-snap.215-T1
Valid prediction for GlimmerHMM_glimmerT_48917-T1
Valid prediction for snap_scaffold_22-snap.230-T1
Valid prediction for snap_scaffold_22-snap.204-T1
Valid prediction for snap_scaffold_22-snap.224-T1
Valid prediction for GlimmerHMM_glimmerT_48913-T1
Valid prediction for Augustus_model.g32674.t1
Valid prediction for snap_scaffold_22-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_48924-T1
Valid prediction for snap_scaffold_22-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_48915-T1
Valid prediction for GlimmerHMM_glimmerT_48904-T1
Valid prediction for snap_scaffold_22-snap.222-T1
Valid prediction for GlimmerHMM_glimmerT_48923-T1
Valid prediction for GlimmerHMM_glimmerT_48931-T1
Valid prediction for snap_scaffold_22-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_48929-T1
Valid prediction for snap_scaffold_22-snap.212-T1
Valid prediction for snap_scaffold_22-snap.239-T1
Valid prediction for GlimmerHMM_glimmerT_48912-T1
Valid prediction for Augustus_model.g32679.t1
Valid prediction for GlimmerHMM_glimmerT_48926-T1
Valid prediction for GlimmerHMM_glimmerT_48914-T1
Valid prediction for GlimmerHMM_glimmerT_48916-T1
Valid prediction for snap_scaffold_22-snap.203-T1
Valid prediction for snap_scaffold_22-snap.218-T1
Valid prediction for snap_scaffold_22-snap.226-T1
Valid prediction for snap_scaffold_22-snap.229-T1
Valid prediction for Augustus_model.g32680.t1
Valid prediction for GlimmerHMM_glimmerT_48921-T1
Valid prediction for snap_scaffold_22-snap.234-T1
Valid prediction for GlimmerHMM_glimmerT_48922-T1
Valid prediction for snap_scaffold_22-snap.216-T1
Valid prediction for GlimmerHMM_glimmerT_48920-T1
Valid prediction for snap_scaffold_22-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_48907-T1
Valid prediction for snap_scaffold_22-snap.237-T1
Valid prediction for GlimmerHMM_glimmerT_48930-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_22-snap.231-T1
Valid prediction for snap_scaffold_22-snap.213-T1
Valid prediction for GlimmerHMM_glimmerT_48908-T1
Valid prediction for snap_scaffold_22-snap.232-T1
Valid prediction for Augustus_model.g32677.t1
Valid prediction for Augustus_model.g32678.t1
Valid prediction for snap_scaffold_22-snap.221-T1
Valid prediction for GlimmerHMM_glimmerT_48918-T1
Valid prediction for Augustus_model.g32675.t1
Valid prediction for snap_scaffold_22-snap.225-T1
Valid prediction for snap_scaffold_22-snap.228-T1
Valid prediction for GlimmerHMM_glimmerT_48911-T1
Valid prediction for GlimmerHMM_glimmerT_48905-T1
Valid prediction for GlimmerHMM_glimmerT_48906-T1
Valid prediction for snap_scaffold_22-snap.207-T1
Valid prediction for snap_scaffold_22-snap.219-T1
Valid prediction for snap_scaffold_22-snap.223-T1
Valid prediction for snap_scaffold_22-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_48925-T1
Valid prediction for GlimmerHMM_glimmerT_48909-T1
Valid prediction for GlimmerHMM_glimmerT_48919-T1
Valid prediction for GlimmerHMM_glimmerT_48932-T1
Valid prediction for snap_scaffold_22-snap.205-T1
Valid prediction for snap_scaffold_22-snap.233-T1
Valid prediction for GlimmerHMM_glimmerT_48910-T1
Valid prediction for snap_scaffold_22-snap.241-T1
Valid prediction for GlimmerHMM_glimmerT_48927-T1
Valid prediction for snap_scaffold_22-snap.202-T1
Valid prediction for snap_scaffold_22-snap.217-T1
Valid prediction for Augustus_model.g32673.t1
Valid prediction for snap_scaffold_22-snap.227-T1
Valid prediction for Augustus_model.g32676.t1
Valid prediction for snap_scaffold_22-snap.235-T1
Valid prediction for snap_scaffold_22-snap.214-T1
Valid prediction for snap_scaffold_22-snap.208-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23776, rend_intergenic: 20459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34754, rend_intergenic: 32702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67192, rend_intergenic: 63994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74309, rend_intergenic: 68748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80570, rend_intergenic: 79500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83700, rend_intergenic: 80706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97179, rend_intergenic: 94328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103161, rend_intergenic: 101050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106213, rend_intergenic: 104834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184560, rend_intergenic: 182084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203036, rend_intergenic: 200888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 209133
-exon list size: 238


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.7    
7.1    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.7    
12.1    
12.5    
12.9    
13.3    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.3    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.7    
22.1    
22.5    
22.9    
23.3    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.7    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.7    
37.1    
37.5    
37.9    
38.3    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.3    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
72.9    
73.3    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.7    
77.1    
77.5    
77.9    
78.3    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.7    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.7    
87.1    
87.5    
87.9    
88.3    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
92.9    
93.3    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 23776, rend_intergenic: 20459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34754, rend_intergenic: 32702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67192, rend_intergenic: 63994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74309, rend_intergenic: 68748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80570, rend_intergenic: 79500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83700, rend_intergenic: 80706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97179, rend_intergenic: 94328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103161, rend_intergenic: 101050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106213, rend_intergenic: 104834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184560, rend_intergenic: 182084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203036, rend_intergenic: 200888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support