-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_22/scaffold_22_1-124775

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_22-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_48747-T1
Valid prediction for HiQ_model.g32536.t1
Valid prediction for GlimmerHMM_glimmerT_48743-T1
Valid prediction for snap_scaffold_22-snap.24-T1
Valid prediction for snap_scaffold_22-snap.20-T1
Valid prediction for GlimmerHMM_glimmerT_48766-T1
Valid prediction for GlimmerHMM_glimmerT_48746-T1
Valid prediction for Augustus_model.g32555.t1
Valid prediction for Augustus_model.g32537.t1
Valid prediction for snap_scaffold_22-snap.2-T1
Valid prediction for snap_scaffold_22-snap.30-T1
Valid prediction for snap_scaffold_22-snap.9-T1
Valid prediction for Augustus_model.g32541.t1
Valid prediction for GlimmerHMM_glimmerT_48748-T1
Valid prediction for snap_scaffold_22-snap.32-T1
Valid prediction for snap_scaffold_22-snap.21-T1
Valid prediction for GlimmerHMM_glimmerT_48741-T1
Valid prediction for snap_scaffold_22-snap.34-T1
Valid prediction for snap_scaffold_22-snap.25-T1
Couldn't classify 115538, 115666
Sorry, prediction pasa_asmbl_29805.p1 fails validation.
(GTT)	 AG	115538-115666	GT	AGG
(GCT)	 AG	117679-117823	GT	AGG
(CAC)	 AG	118118-118213	GT	AGG
(GGG)	 AG	118291-118424	AG	AAA
-recovered pasa_asmbl_29805.p1, terminal, 118291, 118424
-recovered pasa_asmbl_29805.p1, internal, 115538, 115666
-recovered pasa_asmbl_29805.p1, internal, 117679, 117823
-recovered pasa_asmbl_29805.p1, internal, 118118, 118213
Valid prediction for HiQ_model.g32554.t1
Valid prediction for GlimmerHMM_glimmerT_48744-T1
Valid prediction for snap_scaffold_22-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_48750-T1
Valid prediction for snap_scaffold_22-snap.13-T1
Valid prediction for snap_scaffold_22-snap.26-T1
Valid prediction for GlimmerHMM_glimmerT_48749-T1
Valid prediction for snap_scaffold_22-snap.12-T1
Valid prediction for Augustus_model.g32543.t1
Valid prediction for Augustus_model.g32540.t1
Valid prediction for GlimmerHMM_glimmerT_48756-T1
Valid prediction for HiQ_model.g32535.t1
Valid prediction for CodingQuarry_transcript_34058-T1
Couldn't classify 16966, 17013
Couldn't classify 17113, 17361
Sorry, prediction pasa_asmbl_29791.p1 fails validation.
(GAG)	 AG	16966-17013	GT	TGG
(GAG)	 AG	17113-17361	AA	CCA
-recovered pasa_asmbl_29791.p1, internal, 16966, 17013
Valid prediction for GlimmerHMM_glimmerT_48757-T1
Valid prediction for CodingQuarry_transcript_34059-T1
Valid prediction for snap_scaffold_22-snap.10-T1
Valid prediction for snap_scaffold_22-snap.22-T1
Couldn't classify 100748, 100863
Couldn't classify 107658, 107783
Sorry, prediction pasa_asmbl_29803.p1 fails validation.
(GGT)	 TG	100748-100863	GT	TTG
(ATC)	 AG	101595-101695	GT	TGG
(TGA)	 AG	102325-102543	GT	AGG
(GGT)	 AG	103267-103412	GT	AGG
(CTT)	 AG	103971-104009	GT	AGG
(GTT)	 AG	104443-104573	GT	AGG
(TTA)	 AG	104676-104808	GT	AGG
(GAG)	 AG	107658-107783	AC	CCA
-recovered pasa_asmbl_29803.p1, internal, 101595, 101695
-recovered pasa_asmbl_29803.p1, internal, 102325, 102543
-recovered pasa_asmbl_29803.p1, internal, 103267, 103412
-recovered pasa_asmbl_29803.p1, internal, 103971, 104009
-recovered pasa_asmbl_29803.p1, internal, 104443, 104573
-recovered pasa_asmbl_29803.p1, internal, 104676, 104808
Valid prediction for snap_scaffold_22-snap.31-T1
Valid prediction for snap_scaffold_22-snap.35-T1
Valid prediction for pasa_asmbl_29798.p1
Couldn't classify 84027, 84278
Couldn't classify 84491, 84559
Sorry, prediction pasa_asmbl_30444.p1 fails validation.
(GTT)	 GG	84027-84278	GT	TGG
(TGG)	 AG	84491-84559	GG	CTG
Valid prediction for GlimmerHMM_glimmerT_48763-T1
Valid prediction for snap_scaffold_22-snap.6-T1
Couldn't classify 12450, 12605
Couldn't classify 13685, 13726
Sorry, prediction pasa_asmbl_29789.p1 fails validation.
(GCA)	 CC	12450-12605	GT	ATG
(CGG)	 AG	13205-13516	GT	AGG
(GAG)	 AG	13685-13726	AC	GGA
-recovered pasa_asmbl_29789.p1, internal, 13205, 13516
Valid prediction for snap_scaffold_22-snap.29-T1
Valid prediction for Augustus_model.g32546.t1
Couldn't classify 110357, 110740
Sorry, prediction pasa_asmbl_29804.p1 fails validation.
(AGT)	 CA	110357-110740	CA	TGC
Valid prediction for Augustus_model.g32542.t1
Valid prediction for GlimmerHMM_glimmerT_48742-T1
Valid prediction for snap_scaffold_22-snap.11-T1
Valid prediction for Augustus_model.g32552.t1
Valid prediction for GlimmerHMM_glimmerT_48761-T1
Valid prediction for snap_scaffold_22-snap.36-T1
Valid prediction for Augustus_model.g32548.t1
Valid prediction for GlimmerHMM_glimmerT_48754-T1
Valid prediction for GlimmerHMM_glimmerT_48765-T1
Valid prediction for snap_scaffold_22-snap.4-T1
Valid prediction for snap_scaffold_22-snap.28-T1
Valid prediction for HiQ_model.g32539.t1
Valid prediction for pasa_asmbl_29795.p1
Valid prediction for snap_scaffold_22-snap.7-T1
Valid prediction for pasa_asmbl_29788.p1
Couldn't classify 30427, 30439
Sorry, prediction pasa_asmbl_29802.p1 fails validation.
(TAT)	 AT	30427-30439	GT	AGG
(AAC)	 AG	30528-30636	GT	ACG
(CAT)	 AG	30783-30917	GT	AGG
(GGC)	 AG	31040-31358	GC	GAG
-recovered pasa_asmbl_29802.p1, terminal, 31040, 31358
-recovered pasa_asmbl_29802.p1, internal, 30528, 30636
-recovered pasa_asmbl_29802.p1, internal, 30783, 30917
-recovered pasa_asmbl_29802.p1, internal, 31040, 31358
Valid prediction for GlimmerHMM_glimmerT_48764-T1
Valid prediction for snap_scaffold_22-snap.33-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_48768-T1
Valid prediction for GlimmerHMM_glimmerT_48745-T1
Valid prediction for GlimmerHMM_glimmerT_48760-T1
Valid prediction for Augustus_model.g32549.t1
Valid prediction for GlimmerHMM_glimmerT_48769-T1
Valid prediction for GlimmerHMM_glimmerT_48762-T1
Valid prediction for GlimmerHMM_glimmerT_48752-T1
Valid prediction for snap_scaffold_22-snap.15-T1
Valid prediction for Augustus_model.g32556.t1
Valid prediction for Augustus_model.g32544.t1
Valid prediction for GlimmerHMM_glimmerT_48770-T1
Valid prediction for snap_scaffold_22-snap.23-T1
Valid prediction for snap_scaffold_22-snap.37-T1
Valid prediction for GlimmerHMM_glimmerT_48755-T1
Valid prediction for GlimmerHMM_glimmerT_48751-T1
Valid prediction for Augustus_model.g32547.t1
Valid prediction for snap_scaffold_22-snap.14-T1
Valid prediction for snap_scaffold_22-snap.27-T1
Valid prediction for Augustus_model.g32550.t1
Valid prediction for Augustus_model.g32553.t1
Valid prediction for GlimmerHMM_glimmerT_48767-T1
Valid prediction for Augustus_model.g32551.t1
Valid prediction for snap_scaffold_22-snap.18-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_22-snap.16-T1
Valid prediction for GlimmerHMM_glimmerT_48753-T1
Valid prediction for GlimmerHMM_glimmerT_48759-T1
Valid prediction for snap_scaffold_22-snap.5-T1
Valid prediction for snap_scaffold_22-snap.19-T1
Valid prediction for GlimmerHMM_glimmerT_48758-T1
Valid prediction for Augustus_model.g32538.t1
Valid prediction for Augustus_model.g32545.t1
Valid prediction for snap_scaffold_22-snap.8-T1
Valid prediction for snap_scaffold_22-snap.17-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28987, rend_intergenic: 27864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 124775
-exon list size: 280


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.2    
8.5    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.7    
12.1    
12.4    
12.8    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.2    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.5    
19.9    
20.2    
20.6    
20.9    
21.3    
21.6    
22.0    
22.3    
22.7    
23.0    
23.4    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.6    
27.0    
27.3    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.8    
30.1    
30.5    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.8    
35.1    
35.5    
35.8    
36.2    
36.5    
36.9    
37.2    
37.6    
37.9    
38.3    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.5    
41.8    
42.2    
42.6    
42.9    
43.3    
43.6    
44.0    
44.3    
44.7    
45.0    
45.4    
45.7    
46.1    
46.5    
46.8    
47.2    
47.5    
47.9    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.1    
52.5    
52.8    
53.2    
53.5    
53.9    
54.3    
54.6    
55.0    
55.3    
55.7    
56.0    
56.4    
56.7    
57.1    
57.4    
57.8    
58.2    
58.5    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.7    
62.1    
62.4    
62.8    
63.1    
63.5    
63.8    
64.2    
64.5    
64.9    
65.2    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.5    
69.9    
70.2    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.7    
73.0    
73.4    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.6    
77.0    
77.3    
77.7    
78.0    
78.4    
78.7    
79.1    
79.4    
79.8    
80.1    
80.5    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.8    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.2    
87.6    
87.9    
88.3    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.5    
91.8    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 28987, rend_intergenic: 27864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support