-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_219 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 7551, 7706 Sorry, prediction GlimmerHMM_glimmerT_60027-T1 fails validation. (ATG) GG 883-966 GT AGG (AGA) AG 4348-4422 GT AGG (GGA) AG 4510-4590 GT ATG (ATG) AG 4813-4920 GT AGG (GAT) AG 5707-5778 GT AGG (GGA) AG 7095-7254 GT CCG (GGA) AG 7551-7706 GT AGG -recovered GlimmerHMM_glimmerT_60027-T1, initial, 883, 966 -recovered GlimmerHMM_glimmerT_60027-T1, initial, 4813, 4920 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 4348, 4422 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 4510, 4590 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 4813, 4920 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 5707, 5778 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 7095, 7254 -recovered GlimmerHMM_glimmerT_60027-T1, internal, 7551, 7706 Couldn't classify 872, 966 Sorry, prediction snap_scaffold_219-snap.1-T1 fails validation. (GAG) AG 872-966 GT AGG (AGA) AG 4348-4422 GT AGG (GGA) AG 4510-4590 GT ATG (ATG) AG 4813-4920 GT AGG (GAT) AG 5707-5778 GT AGG (ACA) AG 5990-6067 AA GAA -recovered snap_scaffold_219-snap.1-T1, initial, 4813, 4920 -recovered snap_scaffold_219-snap.1-T1, terminal, 5990, 6067 -recovered snap_scaffold_219-snap.1-T1, internal, 872, 966 -recovered snap_scaffold_219-snap.1-T1, internal, 4348, 4422 -recovered snap_scaffold_219-snap.1-T1, internal, 4510, 4590 -recovered snap_scaffold_219-snap.1-T1, internal, 4813, 4920 -recovered snap_scaffold_219-snap.1-T1, internal, 5707, 5778 Couldn't classify 553, 621 Sorry, prediction Augustus_model.g39759.t1 fails validation. (GAT) AG 553-621 GT GAG (GAG) AG 872-966 GT AGG (AGA) AG 4348-4422 GT AGG (GGA) AG 4510-4590 GT ATG (ATG) AG 4813-4920 GT AGG (GAT) AG 5707-5778 GT AGG (GGA) AG 7095-7254 GT CCG (GGA) AG 7551-7706 GT AGG (CTC) AG 8525-8547 AC AAA -recovered Augustus_model.g39759.t1, initial, 4813, 4920 -recovered Augustus_model.g39759.t1, terminal, 8525, 8547 -recovered Augustus_model.g39759.t1, internal, 553, 621 -recovered Augustus_model.g39759.t1, internal, 872, 966 -recovered Augustus_model.g39759.t1, internal, 4348, 4422 -recovered Augustus_model.g39759.t1, internal, 4510, 4590 -recovered Augustus_model.g39759.t1, internal, 4813, 4920 -recovered Augustus_model.g39759.t1, internal, 5707, 5778 -recovered Augustus_model.g39759.t1, internal, 7095, 7254 -recovered Augustus_model.g39759.t1, internal, 7551, 7706 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 1764, 1814 Couldn't classify 8195, 8435 Sorry, prediction snap_scaffold_219-snap.2-T1 fails validation. (GTA) AG 1764-1814 GT CTG (GGT) AG 1843-1894 GT TGG (GGG) AG 4093-4516 GT GTG (AAC) AG 4845-4994 GT AGG (GAT) AG 8195-8435 GT AGG -recovered snap_scaffold_219-snap.2-T1, internal, 1764, 1814 -recovered snap_scaffold_219-snap.2-T1, internal, 1843, 1894 -recovered snap_scaffold_219-snap.2-T1, internal, 4093, 4516 -recovered snap_scaffold_219-snap.2-T1, internal, 4845, 4994 -recovered snap_scaffold_219-snap.2-T1, internal, 8195, 8435 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6067, rend_intergenic: 1007 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9441 -exon list size: 22 building trellis 4.2 8.3 12.5 16.7 20.8 25.0 29.2 33.3 37.5 41.7 45.8 50.0 54.2 58.3 62.5 66.7 70.8 75.0 79.2 83.3 87.5 91.7 95.8 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 6067, rend_intergenic: 1007 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support