-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_219

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7551, 7706
Sorry, prediction GlimmerHMM_glimmerT_60027-T1 fails validation.
(ATG)	 GG	883-966	GT	AGG
(AGA)	 AG	4348-4422	GT	AGG
(GGA)	 AG	4510-4590	GT	ATG
(ATG)	 AG	4813-4920	GT	AGG
(GAT)	 AG	5707-5778	GT	AGG
(GGA)	 AG	7095-7254	GT	CCG
(GGA)	 AG	7551-7706	GT	AGG
-recovered GlimmerHMM_glimmerT_60027-T1, initial, 883, 966
-recovered GlimmerHMM_glimmerT_60027-T1, initial, 4813, 4920
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 4348, 4422
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 4510, 4590
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 4813, 4920
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 5707, 5778
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 7095, 7254
-recovered GlimmerHMM_glimmerT_60027-T1, internal, 7551, 7706
Couldn't classify 872, 966
Sorry, prediction snap_scaffold_219-snap.1-T1 fails validation.
(GAG)	 AG	872-966	GT	AGG
(AGA)	 AG	4348-4422	GT	AGG
(GGA)	 AG	4510-4590	GT	ATG
(ATG)	 AG	4813-4920	GT	AGG
(GAT)	 AG	5707-5778	GT	AGG
(ACA)	 AG	5990-6067	AA	GAA
-recovered snap_scaffold_219-snap.1-T1, initial, 4813, 4920
-recovered snap_scaffold_219-snap.1-T1, terminal, 5990, 6067
-recovered snap_scaffold_219-snap.1-T1, internal, 872, 966
-recovered snap_scaffold_219-snap.1-T1, internal, 4348, 4422
-recovered snap_scaffold_219-snap.1-T1, internal, 4510, 4590
-recovered snap_scaffold_219-snap.1-T1, internal, 4813, 4920
-recovered snap_scaffold_219-snap.1-T1, internal, 5707, 5778
Couldn't classify 553, 621
Sorry, prediction Augustus_model.g39759.t1 fails validation.
(GAT)	 AG	553-621	GT	GAG
(GAG)	 AG	872-966	GT	AGG
(AGA)	 AG	4348-4422	GT	AGG
(GGA)	 AG	4510-4590	GT	ATG
(ATG)	 AG	4813-4920	GT	AGG
(GAT)	 AG	5707-5778	GT	AGG
(GGA)	 AG	7095-7254	GT	CCG
(GGA)	 AG	7551-7706	GT	AGG
(CTC)	 AG	8525-8547	AC	AAA
-recovered Augustus_model.g39759.t1, initial, 4813, 4920
-recovered Augustus_model.g39759.t1, terminal, 8525, 8547
-recovered Augustus_model.g39759.t1, internal, 553, 621
-recovered Augustus_model.g39759.t1, internal, 872, 966
-recovered Augustus_model.g39759.t1, internal, 4348, 4422
-recovered Augustus_model.g39759.t1, internal, 4510, 4590
-recovered Augustus_model.g39759.t1, internal, 4813, 4920
-recovered Augustus_model.g39759.t1, internal, 5707, 5778
-recovered Augustus_model.g39759.t1, internal, 7095, 7254
-recovered Augustus_model.g39759.t1, internal, 7551, 7706

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1764, 1814
Couldn't classify 8195, 8435
Sorry, prediction snap_scaffold_219-snap.2-T1 fails validation.
(GTA)	 AG	1764-1814	GT	CTG
(GGT)	 AG	1843-1894	GT	TGG
(GGG)	 AG	4093-4516	GT	GTG
(AAC)	 AG	4845-4994	GT	AGG
(GAT)	 AG	8195-8435	GT	AGG
-recovered snap_scaffold_219-snap.2-T1, internal, 1764, 1814
-recovered snap_scaffold_219-snap.2-T1, internal, 1843, 1894
-recovered snap_scaffold_219-snap.2-T1, internal, 4093, 4516
-recovered snap_scaffold_219-snap.2-T1, internal, 4845, 4994
-recovered snap_scaffold_219-snap.2-T1, internal, 8195, 8435

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6067, rend_intergenic: 1007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9441
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6067, rend_intergenic: 1007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support