-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 178, 302
Couldn't classify 409, 539
Sorry, prediction snap_scaffold_2183-snap.1-T1 fails validation.
(GTA)	 AG	178-302	GT	AGG
(GCA)	 AG	409-539	GT	AGG
-recovered snap_scaffold_2183-snap.1-T1, internal, 178, 302
-recovered snap_scaffold_2183-snap.1-T1, internal, 409, 539
Couldn't classify 178, 302
Couldn't classify 409, 539
Sorry, prediction Augustus_model.g40804.t1 fails validation.
(GTA)	 AG	178-302	GT	AGG
(GCA)	 AG	409-539	GT	AGG
-recovered Augustus_model.g40804.t1, internal, 178, 302
-recovered Augustus_model.g40804.t1, internal, 409, 539

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1506
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support