-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2180

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 474, 548
Couldn't classify 1207, 1239
Sorry, prediction snap_scaffold_2180-snap.1-T1 fails validation.
(CGA)	 AG	474-548	GT	AGG
(TTT)	 AG	821-904	GT	CAG
(GTG)	 AG	1207-1239	GT	CAG
-recovered snap_scaffold_2180-snap.1-T1, internal, 474, 548
-recovered snap_scaffold_2180-snap.1-T1, internal, 821, 904
-recovered snap_scaffold_2180-snap.1-T1, internal, 1207, 1239
Couldn't classify 821, 904
Sorry, prediction GlimmerHMM_glimmerT_61507-T1 fails validation.
(ATG)	 AG	525-548	GT	AGG
(TTT)	 AG	821-904	GT	CAG
-recovered GlimmerHMM_glimmerT_61507-T1, initial, 525, 548
-recovered GlimmerHMM_glimmerT_61507-T1, internal, 525, 548
-recovered GlimmerHMM_glimmerT_61507-T1, internal, 821, 904
Couldn't classify 431, 548
Sorry, prediction Augustus_model.g40802.t1 fails validation.
(GCT)	 AG	431-548	GT	AGG
(TTT)	 AG	821-904	GT	CAG
(TGT)	 AG	1301-1306	AA	AAA
-recovered Augustus_model.g40802.t1, terminal, 1301, 1306
-recovered Augustus_model.g40802.t1, internal, 431, 548
-recovered Augustus_model.g40802.t1, internal, 821, 904

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1510
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support