-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_218

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_218-snap.3-T1
Valid prediction for snap_scaffold_218-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_32775-T1
Couldn't classify 4264, 4457
Couldn't classify 7290, 7493
Sorry, prediction pasa_asmbl_29065.p1 fails validation.
(CTA)	 CT	4264-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7493	GG	AGG
-recovered pasa_asmbl_29065.p1, internal, 4860, 4973
-recovered pasa_asmbl_29065.p1, internal, 5803, 5959
Couldn't classify 9343, 9429
Sorry, prediction snap_scaffold_218-snap.2-T1 fails validation.
(ATG)	 GA	426-468	GT	CAG
(GTA)	 AG	1904-2045	GT	CAG
(GTA)	 AG	2303-2340	GT	CGG
(TGG)	 AG	4268-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7505	GT	AGG
(CCT)	 AG	9343-9429	GT	TGG
-recovered snap_scaffold_218-snap.2-T1, initial, 426, 468
-recovered snap_scaffold_218-snap.2-T1, internal, 1904, 2045
-recovered snap_scaffold_218-snap.2-T1, internal, 2303, 2340
-recovered snap_scaffold_218-snap.2-T1, internal, 4268, 4457
-recovered snap_scaffold_218-snap.2-T1, internal, 4860, 4973
-recovered snap_scaffold_218-snap.2-T1, internal, 5803, 5959
-recovered snap_scaffold_218-snap.2-T1, internal, 7290, 7505
-recovered snap_scaffold_218-snap.2-T1, internal, 9343, 9429
Couldn't classify 9343, 9444
Sorry, prediction Augustus_model.g39758.t1 fails validation.
(ATG)	 TC	1356-1415	GT	AGG
(CGG)	 AG	1882-2045	GT	CAG
(GTA)	 AG	2303-2384	GT	TGG
(CAC)	 AG	4060-4174	GT	ACG
(TGG)	 AG	4268-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7505	GT	AGG
(CCT)	 AG	9343-9444		TC
-recovered Augustus_model.g39758.t1, initial, 1356, 1415
-recovered Augustus_model.g39758.t1, internal, 1882, 2045
-recovered Augustus_model.g39758.t1, internal, 2303, 2384
-recovered Augustus_model.g39758.t1, internal, 4060, 4174
-recovered Augustus_model.g39758.t1, internal, 4268, 4457
-recovered Augustus_model.g39758.t1, internal, 4860, 4973
-recovered Augustus_model.g39758.t1, internal, 5803, 5959
-recovered Augustus_model.g39758.t1, internal, 7290, 7505
Couldn't classify 1904, 2045
Sorry, prediction GlimmerHMM_glimmerT_60026-T1 fails validation.
(GTA)	 AG	1904-2045	GT	CAG
(CTT)	 AG	4287-4457	GT	TGG
(GGA)	 AG	4860-4973	GT	TGG
(GGA)	 AG	5803-5959	GT	AGG
(GGT)	 AG	7290-7542	GT	ACG
(CCT)	 AG	9343-9377	GG	GAG
-recovered GlimmerHMM_glimmerT_60026-T1, terminal, 9343, 9377
-recovered GlimmerHMM_glimmerT_60026-T1, internal, 1904, 2045
-recovered GlimmerHMM_glimmerT_60026-T1, internal, 4287, 4457
-recovered GlimmerHMM_glimmerT_60026-T1, internal, 4860, 4973
-recovered GlimmerHMM_glimmerT_60026-T1, internal, 5803, 5959
-recovered GlimmerHMM_glimmerT_60026-T1, internal, 7290, 7542

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2120, rend_intergenic: 16  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9019, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9444
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2120, rend_intergenic: 16  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9019, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support