-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2168

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 462, 683
Couldn't classify 1402, 1497
Sorry, prediction pasa_asmbl_29058.p1 fails validation.
(GTG)	 GT	462-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1497	AT	GCA
-recovered pasa_asmbl_29058.p1, internal, 935, 1069
Valid prediction for GlimmerHMM_glimmerT_61503-T1
Couldn't classify 513, 683
Couldn't classify 1402, 1509
Sorry, prediction snap_scaffold_2168-snap.1-T1 fails validation.
(GTG)	 AG	513-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1509	GT	CGG
-recovered snap_scaffold_2168-snap.1-T1, internal, 513, 683
-recovered snap_scaffold_2168-snap.1-T1, internal, 935, 1069
-recovered snap_scaffold_2168-snap.1-T1, internal, 1402, 1509
Couldn't classify 513, 683
Couldn't classify 1402, 1523
Sorry, prediction Augustus_model.g40799.t1 fails validation.
(GTG)	 AG	513-683	GT	AGG
(GTG)	 AG	935-1069	GT	TGG
(ATT)	 AG	1402-1523		CC
-recovered Augustus_model.g40799.t1, internal, 513, 683
-recovered Augustus_model.g40799.t1, internal, 935, 1069

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61504-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61504-T1 448-625-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1523
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support