-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 143, 266
Sorry, prediction snap_scaffold_2164-snap.1-T1 fails validation.
(GGA)	 AG	143-266	GT	AGG
(GTA)	 AG	526-725	GT	AGG
(GCA)	 AG	902-1025	TG	GAT
-recovered snap_scaffold_2164-snap.1-T1, terminal, 902, 1025
-recovered snap_scaffold_2164-snap.1-T1, internal, 143, 266
-recovered snap_scaffold_2164-snap.1-T1, internal, 526, 725
Valid prediction for GlimmerHMM_glimmerT_61500-T1
Couldn't classify 143, 266
Sorry, prediction Augustus_model.g40796.t1 fails validation.
(GGA)	 AG	143-266	GT	AGG
(GTA)	 AG	526-725	GT	AGG
(GCA)	 AG	902-1025	TG	GAT
-recovered Augustus_model.g40796.t1, terminal, 902, 1025
-recovered Augustus_model.g40796.t1, internal, 143, 266
-recovered Augustus_model.g40796.t1, internal, 526, 725

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1526
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support