-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2163

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 951, 1058
Sorry, prediction Augustus_model.g40795.t1 fails validation.
(ATG)	 TC	264-525	GT	AGG
(CAC)	 AG	951-1058	GT	AGG
-recovered Augustus_model.g40795.t1, initial, 264, 525
-recovered Augustus_model.g40795.t1, internal, 951, 1058
Valid prediction for GlimmerHMM_glimmerT_61499-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61499-T1 274-539-terminal-1 is invalid.
Valid prediction for snap_scaffold_2163-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1526
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support