-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_216

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60024-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60024-T1 3806-3981-terminal-1 is invalid.
Couldn't classify 940, 1092
Sorry, prediction Augustus_model.g39756.t1 fails validation.
(AGC)	 AG	940-1092	GT	AGG
(CGT)	 AG	3806-3981	TT	GAT
-recovered Augustus_model.g39756.t1, terminal, 3806, 3981
-recovered Augustus_model.g39756.t1, internal, 940, 1092
Couldn't classify 940, 1092
Sorry, prediction snap_scaffold_216-snap.2-T1 fails validation.
(AGC)	 AG	940-1092	GT	AGG
(CGT)	 AG	3806-3945	GT	TGG
(CTA)	 AG	4617-4688	AA	AGA
-recovered snap_scaffold_216-snap.2-T1, terminal, 4617, 4688
-recovered snap_scaffold_216-snap.2-T1, internal, 940, 1092
-recovered snap_scaffold_216-snap.2-T1, internal, 3806, 3945
Couldn't classify 9139, 9342
Sorry, prediction snap_scaffold_216-snap.3-T1 fails validation.
(ATG)	 TA	7056-7076	GT	AGG
(GAT)	 AG	9139-9342	GT	AAG
-recovered snap_scaffold_216-snap.3-T1, initial, 7056, 7076
-recovered snap_scaffold_216-snap.3-T1, internal, 9139, 9342

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8435, 8625
Sorry, prediction snap_scaffold_216-snap.1-T1 fails validation.
(ATG)	 AT	4901-4919	GT	AGG
(GGA)	 AG	5546-5579	GT	CGG
(CCC)	 AG	5625-5817	GT	AGG
(GAG)	 AG	5837-6112	GT	AGG
(GTG)	 AG	8435-8625	GT	AGG
-recovered snap_scaffold_216-snap.1-T1, initial, 4901, 4919
-recovered snap_scaffold_216-snap.1-T1, internal, 5546, 5579
-recovered snap_scaffold_216-snap.1-T1, internal, 5625, 5817
-recovered snap_scaffold_216-snap.1-T1, internal, 5837, 6112
-recovered snap_scaffold_216-snap.1-T1, internal, 8435, 8625
Valid prediction for snap_scaffold_216-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60025-T1
Valid prediction for Augustus_model.g39757.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4567, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9342, rend_intergenic: 7508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9467
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4567, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9342, rend_intergenic: 7508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support