-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2149

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 77, 183
Couldn't classify 1343, 1432
Sorry, prediction pasa_asmbl_29050.p1 fails validation.
(GAG)	 CA	77-183	GT	GTG
(GAG)	 AG	622-702	GT	AGG
(CAA)	 AG	870-887	GT	AGG
(CCC)	 AG	1010-1091	GT	AGG
(GAC)	 AG	1343-1432	TG	CCT
-recovered pasa_asmbl_29050.p1, internal, 622, 702
-recovered pasa_asmbl_29050.p1, internal, 870, 887
-recovered pasa_asmbl_29050.p1, internal, 1010, 1091
Couldn't classify 78, 183
Sorry, prediction Augustus_model.g40788.t1 fails validation.
(AGC)	 AG	78-183	GT	GTG
(GAG)	 AG	622-702	GT	AGG
(CAA)	 AG	870-887	GT	AGG
(CCC)	 AG	1010-1091	GT	AGG
(GAC)	 AG	1343-1441	TA	AGT
-recovered Augustus_model.g40788.t1, terminal, 1343, 1441
-recovered Augustus_model.g40788.t1, internal, 78, 183
-recovered Augustus_model.g40788.t1, internal, 622, 702
-recovered Augustus_model.g40788.t1, internal, 870, 887
-recovered Augustus_model.g40788.t1, internal, 1010, 1091
Couldn't classify 78, 181
Sorry, prediction snap_scaffold_2149-snap.1-T1 fails validation.
(AGC)	 AG	78-181	GT	AAG
(GAG)	 AG	622-702	GT	AGG
(TTC)	 AG	987-1142	AT	GAA
-recovered snap_scaffold_2149-snap.1-T1, terminal, 987, 1142
-recovered snap_scaffold_2149-snap.1-T1, internal, 78, 181
-recovered snap_scaffold_2149-snap.1-T1, internal, 622, 702
Valid prediction for GlimmerHMM_glimmerT_61492-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1540
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support