-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_214

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 946, 1102
Sorry, prediction snap_scaffold_214-snap.2-T1 fails validation.
(GTC)	 AG	946-1102	GT	AGG
(GGC)	 AG	1741-1818	GT	GGG
(GTG)	 AG	2889-2996	GT	AGG
(GAG)	 AG	4095-4175	GT	AGG
(GAG)	 AG	4261-4446	AC	AGA
-recovered snap_scaffold_214-snap.2-T1, terminal, 4261, 4446
-recovered snap_scaffold_214-snap.2-T1, internal, 946, 1102
-recovered snap_scaffold_214-snap.2-T1, internal, 1741, 1818
-recovered snap_scaffold_214-snap.2-T1, internal, 2889, 2996
-recovered snap_scaffold_214-snap.2-T1, internal, 4095, 4175
Couldn't classify 946, 1102
Sorry, prediction Augustus_model.g39753.t1 fails validation.
(GTC)	 AG	946-1102	GT	AGG
(GTG)	 AG	2889-2996	GT	AGG
(GAG)	 AG	4095-4175	GT	AGG
(GAG)	 AG	4261-4446	AC	AGA
-recovered Augustus_model.g39753.t1, terminal, 4261, 4446
-recovered Augustus_model.g39753.t1, internal, 946, 1102
-recovered Augustus_model.g39753.t1, internal, 2889, 2996
-recovered Augustus_model.g39753.t1, internal, 4095, 4175
Valid prediction for snap_scaffold_214-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60019-T1
Valid prediction for GlimmerHMM_glimmerT_60018-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8446, 8575
Sorry, prediction snap_scaffold_214-snap.1-T1 fails validation.
(ATG)	 CA	3754-3776	GT	ACG
(ACG)	 AG	5167-5271	GT	GGG
(CTT)	 AG	5392-5495	GT	AGG
(AGG)	 AG	7784-8034	GT	TAG
(GCT)	 AG	8446-8575	GT	GCG
-recovered snap_scaffold_214-snap.1-T1, initial, 3754, 3776
-recovered snap_scaffold_214-snap.1-T1, internal, 5167, 5271
-recovered snap_scaffold_214-snap.1-T1, internal, 5392, 5495
-recovered snap_scaffold_214-snap.1-T1, internal, 7784, 8034
-recovered snap_scaffold_214-snap.1-T1, internal, 8446, 8575
Valid prediction for Augustus_model.g39754.t1
Valid prediction for snap_scaffold_214-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60020-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5760, rend_intergenic: 946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9513
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5760, rend_intergenic: 946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support