-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2139

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1303, 1426
Sorry, prediction snap_scaffold_2139-snap.1-T1 fails validation.
(ATG)	 CG	976-1075	GT	TGG
(CTC)	 AG	1212-1242	GT	CAG
(CAG)	 AG	1303-1426	GT	TGG
-recovered snap_scaffold_2139-snap.1-T1, initial, 976, 1075
-recovered snap_scaffold_2139-snap.1-T1, internal, 1212, 1242
-recovered snap_scaffold_2139-snap.1-T1, internal, 1303, 1426
Valid prediction for GlimmerHMM_glimmerT_61487-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61487-T1 969-1332-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1549
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support