-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2135

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 882, 957
Sorry, prediction snap_scaffold_2135-snap.1-T1 fails validation.
(GGT)	 AG	882-957	GT	GGG
(CCC)	 AG	1359-1495	CC	AAC
-recovered snap_scaffold_2135-snap.1-T1, terminal, 1359, 1495
-recovered snap_scaffold_2135-snap.1-T1, internal, 882, 957
Couldn't classify 1171, 1551
Sorry, prediction pasa_asmbl_29046.p1 fails validation.
(TGC)	 TA	1171-1551	C	AGC
Couldn't classify 1223, 1369
Sorry, prediction Augustus_model.g40785.t1 fails validation.
(ATG)	 TG	855-957	GT	GGG
(AGA)	 AG	1223-1369	GC	AGG
-recovered Augustus_model.g40785.t1, initial, 855, 957
-recovered Augustus_model.g40785.t1, internal, 1223, 1369

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1552
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support