-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2134

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1121, 1348
Sorry, prediction GlimmerHMM_glimmerT_61485-T1 fails validation.
(ATG)	 TC	292-312	GT	AGG
(GGG)	 AG	430-540	GT	CGG
(GAG)	 AG	1121-1348	GT	ATG
-recovered GlimmerHMM_glimmerT_61485-T1, initial, 292, 312
-recovered GlimmerHMM_glimmerT_61485-T1, internal, 430, 540
-recovered GlimmerHMM_glimmerT_61485-T1, internal, 1121, 1348
Couldn't classify 188, 312
Couldn't classify 1418, 1552
Sorry, prediction Augustus_model.g40784.t1 fails validation.
(GCT)	 AG	188-312	GT	AGG
(GGG)	 AG	430-489	GT	AGG
(GAG)	 AG	1121-1348	GT	ATG
(ATG)	 AG	1418-1552		TC
-recovered Augustus_model.g40784.t1, internal, 188, 312
-recovered Augustus_model.g40784.t1, internal, 430, 489
-recovered Augustus_model.g40784.t1, internal, 1121, 1348
Couldn't classify 188, 312
Couldn't classify 1418, 1472
Sorry, prediction snap_scaffold_2134-snap.1-T1 fails validation.
(GCT)	 AG	188-312	GT	AGG
(GGG)	 AG	430-540	GT	CGG
(GAG)	 AG	1121-1348	GT	ATG
(ATG)	 AG	1418-1472	GT	CGG
-recovered snap_scaffold_2134-snap.1-T1, initial, 1418, 1472
-recovered snap_scaffold_2134-snap.1-T1, internal, 188, 312
-recovered snap_scaffold_2134-snap.1-T1, internal, 430, 540
-recovered snap_scaffold_2134-snap.1-T1, internal, 1121, 1348
-recovered snap_scaffold_2134-snap.1-T1, internal, 1418, 1472

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1552
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support