-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_212

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9093, 9446
Sorry, prediction snap_scaffold_212-snap.4-T1 fails validation.
(ATG)	 GG	7367-7406	GT	AGG
(GTA)	 AG	9093-9446	GT	CGG
-recovered snap_scaffold_212-snap.4-T1, initial, 7367, 7406
-recovered snap_scaffold_212-snap.4-T1, internal, 9093, 9446
Valid prediction for GlimmerHMM_glimmerT_60015-T1
Valid prediction for snap_scaffold_212-snap.2-T1
Valid prediction for snap_scaffold_212-snap.3-T1
Couldn't classify 2179, 2313
Sorry, prediction pasa_asmbl_29038.p1 fails validation.
(GAT)	 CA	2179-2313	GT	AGG
(AAA)	 AG	2617-2826	AG	GAA
-recovered pasa_asmbl_29038.p1, terminal, 2617, 2826
Valid prediction for snap_scaffold_212-snap.1-T1
Couldn't classify 1421, 1489
Sorry, prediction Augustus_model.g39751.t1 fails validation.
(TTG)	 AG	1421-1489	GT	AGG
(ATC)	 AG	2180-2313	GT	AGG
(GTT)	 AG	2578-2811	GT	AGG
(CAA)	 AG	3914-4039	GT	AGG
(ACC)	 AG	4826-4981	CT	GAC
-recovered Augustus_model.g39751.t1, terminal, 4826, 4981
-recovered Augustus_model.g39751.t1, internal, 1421, 1489
-recovered Augustus_model.g39751.t1, internal, 2180, 2313
-recovered Augustus_model.g39751.t1, internal, 2578, 2811
-recovered Augustus_model.g39751.t1, internal, 3914, 4039

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9562
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support