-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 386
Sorry, prediction Augustus_model.g40773.t1 fails validation.
(TCA)	 AC	1-386	CT	AAC
Couldn't classify 1, 386
Sorry, prediction GlimmerHMM_glimmerT_61472-T1 fails validation.
(TCA)	 AC	1-386	CT	AAC
Couldn't classify 189, 368
Couldn't classify 1444, 1575
Sorry, prediction snap_scaffold_2102-snap.1-T1 fails validation.
(GTG)	 AG	189-368	GT	ATG
(ATC)	 AG	475-576	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(GCC)	 AG	1444-1575	GT	AGG
-recovered snap_scaffold_2102-snap.1-T1, internal, 189, 368
-recovered snap_scaffold_2102-snap.1-T1, internal, 475, 576
-recovered snap_scaffold_2102-snap.1-T1, internal, 862, 932
-recovered snap_scaffold_2102-snap.1-T1, internal, 1083, 1271
-recovered snap_scaffold_2102-snap.1-T1, internal, 1444, 1575
Couldn't classify 1404, 1584
Sorry, prediction Augustus_model.g40774.t1 fails validation.
(ATG)	 TG	465-576	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(CAC)	 AG	1404-1584		AC
-recovered Augustus_model.g40774.t1, initial, 465, 576
-recovered Augustus_model.g40774.t1, internal, 862, 932
-recovered Augustus_model.g40774.t1, internal, 1083, 1271
Couldn't classify 1404, 1575
Sorry, prediction GlimmerHMM_glimmerT_61473-T1 fails validation.
(ATG)	 TG	465-576	GT	AGG
(GTG)	 AG	682-771	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(CAC)	 AG	1404-1575	GT	AGG
-recovered GlimmerHMM_glimmerT_61473-T1, initial, 465, 576
-recovered GlimmerHMM_glimmerT_61473-T1, internal, 682, 771
-recovered GlimmerHMM_glimmerT_61473-T1, internal, 862, 932
-recovered GlimmerHMM_glimmerT_61473-T1, internal, 1083, 1271
-recovered GlimmerHMM_glimmerT_61473-T1, internal, 1404, 1575

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1584
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support