-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_210

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 131
Sorry, prediction snap_scaffold_210-snap.1-T1 fails validation.
(GTG)	 AG	60-131	GT	AGG
(ACC)	 AG	253-359	GT	AGG
(GAT)	 AG	1787-1908	GT	TGG
(GCA)	 AG	1956-2384	GT	GAG
(ACC)	 AG	2568-2646	GT	CGG
(TAT)	 AG	2921-3091	GT	GCG
(GTA)	 AG	3311-3428	GT	AGG
(TTG)	 AG	3539-3690	GT	AGG
(GTT)	 AG	4572-4734	GT	AGG
(GTT)	 AG	5940-6015	GT	AGG
(GAT)	 AG	7105-7199	TG	GAT
-recovered snap_scaffold_210-snap.1-T1, terminal, 7105, 7199
-recovered snap_scaffold_210-snap.1-T1, internal, 60, 131
-recovered snap_scaffold_210-snap.1-T1, internal, 253, 359
-recovered snap_scaffold_210-snap.1-T1, internal, 1787, 1908
-recovered snap_scaffold_210-snap.1-T1, internal, 1956, 2384
-recovered snap_scaffold_210-snap.1-T1, internal, 2568, 2646
-recovered snap_scaffold_210-snap.1-T1, internal, 2921, 3091
-recovered snap_scaffold_210-snap.1-T1, internal, 3311, 3428
-recovered snap_scaffold_210-snap.1-T1, internal, 3539, 3690
-recovered snap_scaffold_210-snap.1-T1, internal, 4572, 4734
-recovered snap_scaffold_210-snap.1-T1, internal, 5940, 6015
Valid prediction for GlimmerHMM_glimmerT_60012-T1
Couldn't classify 60, 131
Sorry, prediction Augustus_model.g39749.t1 fails validation.
(GTG)	 AG	60-131	GT	AGG
(ATG)	 AG	259-359	GT	AGG
(GAT)	 AG	1787-1908	GT	TGG
(ACC)	 AG	2568-2646	GT	CGG
(TAT)	 AG	2921-3091	GT	GCG
(GTA)	 AG	3311-3428	GT	AGG
(TTG)	 AG	3539-3690	GT	AGG
(GTT)	 AG	4572-4734	GT	AGG
(GAG)	 AG	4980-5090	CA	GAC
-recovered Augustus_model.g39749.t1, initial, 259, 359
-recovered Augustus_model.g39749.t1, terminal, 4980, 5090
-recovered Augustus_model.g39749.t1, internal, 60, 131
-recovered Augustus_model.g39749.t1, internal, 259, 359
-recovered Augustus_model.g39749.t1, internal, 1787, 1908
-recovered Augustus_model.g39749.t1, internal, 2568, 2646
-recovered Augustus_model.g39749.t1, internal, 2921, 3091
-recovered Augustus_model.g39749.t1, internal, 3311, 3428
-recovered Augustus_model.g39749.t1, internal, 3539, 3690
-recovered Augustus_model.g39749.t1, internal, 4572, 4734
Valid prediction for GlimmerHMM_glimmerT_60011-T1
Valid prediction for GlimmerHMM_glimmerT_60010-T1
Couldn't classify 310, 359
Sorry, prediction pasa_asmbl_29031.p1 fails validation.
(CAG)	 TG	310-359	GT	AGG
(GAT)	 AG	1787-1908	GT	TGG
(ACC)	 AG	2568-2646	GT	CGG
(TAT)	 AG	2921-3091	GT	GCG
(GTA)	 AG	3311-3428	GT	AGG
(TTG)	 AG	3539-3690	GT	AGG
(GTT)	 AG	4572-4734	GT	AGG
(GAG)	 AG	4980-5090	CA	GAC
-recovered pasa_asmbl_29031.p1, terminal, 4980, 5090
-recovered pasa_asmbl_29031.p1, internal, 1787, 1908
-recovered pasa_asmbl_29031.p1, internal, 2568, 2646
-recovered pasa_asmbl_29031.p1, internal, 2921, 3091
-recovered pasa_asmbl_29031.p1, internal, 3311, 3428
-recovered pasa_asmbl_29031.p1, internal, 3539, 3690
-recovered pasa_asmbl_29031.p1, internal, 4572, 4734

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39750.t1
Couldn't classify 107, 254
Couldn't classify 7714, 7858
Sorry, prediction snap_scaffold_210-snap.2-T1 fails validation.
(GAC)	 AG	107-254	GT	GTG
(GTA)	 AG	2431-2482	GT	AGG
(GCC)	 AG	4890-5005	GT	AGG
(TGG)	 AG	6544-6612	GT	TAG
(ATG)	 AG	7714-7858	GT	GGG
-recovered snap_scaffold_210-snap.2-T1, initial, 7714, 7858
-recovered snap_scaffold_210-snap.2-T1, internal, 107, 254
-recovered snap_scaffold_210-snap.2-T1, internal, 2431, 2482
-recovered snap_scaffold_210-snap.2-T1, internal, 4890, 5005
-recovered snap_scaffold_210-snap.2-T1, internal, 6544, 6612
-recovered snap_scaffold_210-snap.2-T1, internal, 7714, 7858

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7199, rend_intergenic: 1747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9604
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7199, rend_intergenic: 1747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support