-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_9405797-9686602

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_48375-T1
Valid prediction for snap_scaffold_21-snap.2058-T1
Valid prediction for snap_scaffold_21-snap.2052-T1
Valid prediction for Augustus_model.g32317.t1
Valid prediction for GlimmerHMM_glimmerT_48372-T1
Valid prediction for GlimmerHMM_glimmerT_48385-T1
Valid prediction for snap_scaffold_21-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_48387-T1
Valid prediction for Augustus_model.g32310.t1
Valid prediction for snap_scaffold_21-snap.2067-T1
Valid prediction for snap_scaffold_21-snap.2039-T1
Valid prediction for snap_scaffold_21-snap.2059-T1
Valid prediction for snap_scaffold_21-snap.2053-T1
Valid prediction for snap_scaffold_21-snap.2072-T1
Valid prediction for Augustus_model.g32319.t1
Valid prediction for snap_scaffold_21-snap.2079-T1
Valid prediction for GlimmerHMM_glimmerT_48393-T1
Valid prediction for snap_scaffold_21-snap.2055-T1
Valid prediction for snap_scaffold_21-snap.2048-T1
Valid prediction for snap_scaffold_21-snap.2078-T1
Valid prediction for GlimmerHMM_glimmerT_48369-T1
Valid prediction for Augustus_model.g32325.t1
Valid prediction for Augustus_model.g32318.t1
Valid prediction for GlimmerHMM_glimmerT_48397-T1
Valid prediction for GlimmerHMM_glimmerT_48370-T1
Valid prediction for Augustus_model.g32327.t1
Valid prediction for Augustus_model.g32330.t1
Valid prediction for GlimmerHMM_glimmerT_48364-T1
Valid prediction for snap_scaffold_21-snap.2082-T1
Valid prediction for GlimmerHMM_glimmerT_48368-T1
Valid prediction for GlimmerHMM_glimmerT_48389-T1
Valid prediction for snap_scaffold_21-snap.2083-T1
Valid prediction for snap_scaffold_21-snap.2056-T1
Valid prediction for GlimmerHMM_glimmerT_48376-T1
Valid prediction for snap_scaffold_21-snap.2073-T1
Valid prediction for snap_scaffold_21-snap.2054-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g32312.t1
Valid prediction for snap_scaffold_21-snap.2085-T1
Valid prediction for Augustus_model.g32320.t1
Valid prediction for GlimmerHMM_glimmerT_48399-T1
Valid prediction for GlimmerHMM_glimmerT_48367-T1
Valid prediction for snap_scaffold_21-snap.2088-T1
Valid prediction for snap_scaffold_21-snap.2063-T1
Valid prediction for Augustus_model.g32313.t1
Valid prediction for GlimmerHMM_glimmerT_48382-T1
Valid prediction for snap_scaffold_21-snap.2050-T1
Valid prediction for snap_scaffold_21-snap.2068-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48374-T1
Valid prediction for snap_scaffold_21-snap.2042-T1
Valid prediction for snap_scaffold_21-snap.2035-T1
Valid prediction for snap_scaffold_21-snap.2064-T1
Valid prediction for Augustus_model.g32315.t1
Valid prediction for GlimmerHMM_glimmerT_48371-T1
Valid prediction for Augustus_model.g32314.t1
Valid prediction for snap_scaffold_21-snap.2069-T1
Valid prediction for snap_scaffold_21-snap.2075-T1
Valid prediction for snap_scaffold_21-snap.2044-T1
Valid prediction for snap_scaffold_21-snap.2086-T1
Valid prediction for snap_scaffold_21-snap.2071-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.2070-T1
Valid prediction for snap_scaffold_21-snap.2051-T1
Valid prediction for snap_scaffold_21-snap.2049-T1
Valid prediction for GlimmerHMM_glimmerT_48366-T1
Valid prediction for snap_scaffold_21-snap.2043-T1
Valid prediction for snap_scaffold_21-snap.2081-T1
Valid prediction for GlimmerHMM_glimmerT_48379-T1
Valid prediction for snap_scaffold_21-snap.2060-T1
Valid prediction for snap_scaffold_21-snap.2061-T1
Valid prediction for GlimmerHMM_glimmerT_48373-T1
Valid prediction for GlimmerHMM_glimmerT_48365-T1
Valid prediction for Augustus_model.g32331.t1
Valid prediction for GlimmerHMM_glimmerT_48392-T1
Valid prediction for GlimmerHMM_glimmerT_48396-T1
Valid prediction for GlimmerHMM_glimmerT_48383-T1
Valid prediction for Augustus_model.g32328.t1
Valid prediction for snap_scaffold_21-snap.2084-T1
Valid prediction for GlimmerHMM_glimmerT_48395-T1
Valid prediction for GlimmerHMM_glimmerT_48380-T1
Valid prediction for snap_scaffold_21-snap.2087-T1
Valid prediction for GlimmerHMM_glimmerT_48390-T1
Valid prediction for snap_scaffold_21-snap.2047-T1
Valid prediction for Augustus_model.g32324.t1
Valid prediction for snap_scaffold_21-snap.2080-T1
Valid prediction for snap_scaffold_21-snap.2037-T1
Valid prediction for snap_scaffold_21-snap.2065-T1
Valid prediction for Augustus_model.g32311.t1
Valid prediction for GlimmerHMM_glimmerT_48394-T1
Valid prediction for Augustus_model.g32329.t1
Valid prediction for Augustus_model.g32316.t1
Valid prediction for snap_scaffold_21-snap.2046-T1
Valid prediction for GlimmerHMM_glimmerT_48391-T1
Valid prediction for Augustus_model.g32323.t1
Valid prediction for GlimmerHMM_glimmerT_48377-T1
Valid prediction for snap_scaffold_21-snap.2057-T1
Valid prediction for snap_scaffold_21-snap.2040-T1
Valid prediction for Augustus_model.g32332.t1
Valid prediction for GlimmerHMM_glimmerT_48386-T1
Valid prediction for GlimmerHMM_glimmerT_48388-T1
Valid prediction for Augustus_model.g32326.t1
Valid prediction for snap_scaffold_21-snap.2041-T1
Valid prediction for Augustus_model.g32321.t1
Valid prediction for snap_scaffold_21-snap.2076-T1
Valid prediction for snap_scaffold_21-snap.2077-T1
Valid prediction for snap_scaffold_21-snap.2036-T1
Valid prediction for Augustus_model.g32322.t1
Valid prediction for GlimmerHMM_glimmerT_48398-T1
Valid prediction for snap_scaffold_21-snap.2038-T1
Valid prediction for snap_scaffold_21-snap.2074-T1
Valid prediction for snap_scaffold_21-snap.2062-T1
Valid prediction for GlimmerHMM_glimmerT_48381-T1
Valid prediction for snap_scaffold_21-snap.2045-T1
Valid prediction for GlimmerHMM_glimmerT_48384-T1
Valid prediction for GlimmerHMM_glimmerT_48378-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 140675, rend_intergenic: 140672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17652, rend_intergenic: 2972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19077, rend_intergenic: 18804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36798, rend_intergenic: 19514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46092, rend_intergenic: 37591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50428, rend_intergenic: 47348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80296, rend_intergenic: 55949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94491, rend_intergenic: 80649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101838, rend_intergenic: 96636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136000, rend_intergenic: 104367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144255, rend_intergenic: 138450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149510, rend_intergenic: 145535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160584, rend_intergenic: 149757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163822, rend_intergenic: 161274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181696, rend_intergenic: 164196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204427, rend_intergenic: 181839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212426, rend_intergenic: 207160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223754, rend_intergenic: 219654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226179, rend_intergenic: 224020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233544, rend_intergenic: 228793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236546, rend_intergenic: 234219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 241566, rend_intergenic: 237897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257157, rend_intergenic: 242984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257836, rend_intergenic: 257710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 270837, rend_intergenic: 258026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280145, rend_intergenic: 272638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 280806
-exon list size: 571


building trellis

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24.6    
24.8    
25.0    
25.1    
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25.5    
25.7    
25.8    
26.0    
26.2    
26.4    
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27.9    
28.1    
28.3    
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28.6    
28.8    
29.0    
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29.3    
29.5    
29.7    
29.8    
30.0    
30.2    
30.4    
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30.9    
31.1    
31.2    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.5    
32.6    
32.8    
33.0    
33.2    
33.3    
33.5    
33.7    
33.9    
34.0    
34.2    
34.4    
34.6    
34.7    
34.9    
35.1    
35.3    
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35.6    
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36.3    
36.5    
36.6    
36.8    
37.0    
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37.9    
38.0    
38.2    
38.4    
38.6    
38.7    
38.9    
39.1    
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40.0    
40.1    
40.3    
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40.7    
40.8    
41.0    
41.2    
41.4    
41.5    
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41.9    
42.1    
42.2    
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42.6    
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43.1    
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43.5    
43.6    
43.8    
44.0    
44.2    
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44.9    
45.0    
45.2    
45.4    
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45.9    
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46.6    
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47.3    
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48.2    
48.3    
48.5    
48.7    
48.9    
49.0    
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49.6    
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50.1    
50.3    
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51.8    
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52.2    
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52.9    
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54.8    
55.0    
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55.7    
55.8    
56.0    
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56.7    
56.9    
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57.2    
57.4    
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59.3    
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64.0    
64.2    
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72.1    
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80.3    
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85.0    
85.2    
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92.8    
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96.0    
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98.3    
98.4    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 36 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 140675, rend_intergenic: 140672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17652, rend_intergenic: 2972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19077, rend_intergenic: 18804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36798, rend_intergenic: 19514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46092, rend_intergenic: 37591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50428, rend_intergenic: 47348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80296, rend_intergenic: 55949  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94491, rend_intergenic: 80649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101838, rend_intergenic: 96636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136000, rend_intergenic: 104367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144255, rend_intergenic: 138450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149510, rend_intergenic: 145535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160584, rend_intergenic: 149757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163822, rend_intergenic: 161274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181696, rend_intergenic: 164196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204427, rend_intergenic: 181839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212426, rend_intergenic: 207160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223754, rend_intergenic: 219654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226179, rend_intergenic: 224020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233544, rend_intergenic: 228793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236546, rend_intergenic: 234219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 241566, rend_intergenic: 237897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257157, rend_intergenic: 242984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257836, rend_intergenic: 257710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 270837, rend_intergenic: 258026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 280145, rend_intergenic: 272638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support