-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_9296816-9407671

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.2008-T1
Valid prediction for snap_scaffold_21-snap.2034-T1
Valid prediction for snap_scaffold_21-snap.2027-T1
Valid prediction for GlimmerHMM_glimmerT_48351-T1
Valid prediction for snap_scaffold_21-snap.2010-T1
Valid prediction for GlimmerHMM_glimmerT_48350-T1
Valid prediction for GlimmerHMM_glimmerT_48356-T1
Valid prediction for snap_scaffold_21-snap.2018-T1
Valid prediction for GlimmerHMM_glimmerT_48349-T1
Valid prediction for snap_scaffold_21-snap.2024-T1
Valid prediction for snap_scaffold_21-snap.2028-T1
Valid prediction for Augustus_model.g32300.t1
Valid prediction for Augustus_model.g32303.t1
Valid prediction for snap_scaffold_21-snap.2017-T1
Valid prediction for snap_scaffold_21-snap.2021-T1
Valid prediction for GlimmerHMM_glimmerT_48347-T1
Valid prediction for Augustus_model.g32302.t1
Valid prediction for Augustus_model.g32301.t1
Valid prediction for snap_scaffold_21-snap.2025-T1
Valid prediction for snap_scaffold_21-snap.2016-T1
Valid prediction for snap_scaffold_21-snap.2004-T1
Valid prediction for Augustus_model.g32305.t1
Valid prediction for snap_scaffold_21-snap.2031-T1
Valid prediction for GlimmerHMM_glimmerT_48353-T1
Valid prediction for snap_scaffold_21-snap.2032-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2022-T1
Valid prediction for snap_scaffold_21-snap.2015-T1
Valid prediction for GlimmerHMM_glimmerT_48357-T1
Valid prediction for snap_scaffold_21-snap.2005-T1
Valid prediction for Augustus_model.g32307.t1
Valid prediction for GlimmerHMM_glimmerT_48359-T1
Valid prediction for GlimmerHMM_glimmerT_48360-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g32308.t1
Valid prediction for snap_scaffold_21-snap.2019-T1
Valid prediction for GlimmerHMM_glimmerT_48361-T1
Valid prediction for snap_scaffold_21-snap.2007-T1
Valid prediction for snap_scaffold_21-snap.2026-T1
Valid prediction for GlimmerHMM_glimmerT_48346-T1
Valid prediction for snap_scaffold_21-snap.2023-T1
Valid prediction for GlimmerHMM_glimmerT_48363-T1
Valid prediction for snap_scaffold_21-snap.2011-T1
Valid prediction for GlimmerHMM_glimmerT_48362-T1
Valid prediction for GlimmerHMM_glimmerT_48348-T1
Valid prediction for snap_scaffold_21-snap.2020-T1
Valid prediction for snap_scaffold_21-snap.2006-T1
Valid prediction for Augustus_model.g32304.t1
Valid prediction for snap_scaffold_21-snap.2033-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48358-T1
Valid prediction for Augustus_model.g32306.t1
Valid prediction for snap_scaffold_21-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_48355-T1
Valid prediction for snap_scaffold_21-snap.2030-T1
Valid prediction for Augustus_model.g32309.t1
Valid prediction for snap_scaffold_21-snap.2014-T1
Valid prediction for snap_scaffold_21-snap.2013-T1
Valid prediction for GlimmerHMM_glimmerT_48354-T1
Valid prediction for snap_scaffold_21-snap.2029-T1
Valid prediction for snap_scaffold_21-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_48352-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12798, rend_intergenic: 9382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17886, rend_intergenic: 13880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25464, rend_intergenic: 21817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50372, rend_intergenic: 48227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59992, rend_intergenic: 58827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74944, rend_intergenic: 67771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79024, rend_intergenic: 74995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92979, rend_intergenic: 86935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95674, rend_intergenic: 92998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100834, rend_intergenic: 98370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108754, rend_intergenic: 100843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 110856
-exon list size: 195


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.6    
4.1    
4.6    
5.1    
5.6    
6.1    
6.6    
7.1    
7.6    
8.1    
8.6    
9.1    
9.6    
10.2    
10.7    
11.2    
11.7    
12.2    
12.7    
13.2    
13.7    
14.2    
14.7    
15.2    
15.7    
16.2    
16.8    
17.3    
17.8    
18.3    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.8    
22.3    
22.8    
23.4    
23.9    
24.4    
24.9    
25.4    
25.9    
26.4    
26.9    
27.4    
27.9    
28.4    
28.9    
29.4    
29.9    
30.5    
31.0    
31.5    
32.0    
32.5    
33.0    
33.5    
34.0    
34.5    
35.0    
35.5    
36.0    
36.5    
37.1    
37.6    
38.1    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.6    
42.1    
42.6    
43.1    
43.7    
44.2    
44.7    
45.2    
45.7    
46.2    
46.7    
47.2    
47.7    
48.2    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.8    
52.3    
52.8    
53.3    
53.8    
54.3    
54.8    
55.3    
55.8    
56.3    
56.9    
57.4    
57.9    
58.4    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.9    
62.4    
62.9    
63.5    
64.0    
64.5    
65.0    
65.5    
66.0    
66.5    
67.0    
67.5    
68.0    
68.5    
69.0    
69.5    
70.1    
70.6    
71.1    
71.6    
72.1    
72.6    
73.1    
73.6    
74.1    
74.6    
75.1    
75.6    
76.1    
76.6    
77.2    
77.7    
78.2    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.7    
82.2    
82.7    
83.2    
83.8    
84.3    
84.8    
85.3    
85.8    
86.3    
86.8    
87.3    
87.8    
88.3    
88.8    
89.3    
89.8    
90.4    
90.9    
91.4    
91.9    
92.4    
92.9    
93.4    
93.9    
94.4    
94.9    
95.4    
95.9    
96.4    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 12798, rend_intergenic: 9382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17886, rend_intergenic: 13880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25464, rend_intergenic: 21817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50372, rend_intergenic: 48227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59992, rend_intergenic: 58827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74944, rend_intergenic: 67771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79024, rend_intergenic: 74995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92979, rend_intergenic: 86935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95674, rend_intergenic: 92998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100834, rend_intergenic: 98370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108754, rend_intergenic: 100843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support