-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_8592977-8701973

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.1845-T1
Valid prediction for snap_scaffold_21-snap.1840-T1
Valid prediction for Augustus_model.g32240.t1
Valid prediction for Augustus_model.g32242.t1
Valid prediction for GlimmerHMM_glimmerT_48258-T1
Valid prediction for snap_scaffold_21-snap.1836-T1
Valid prediction for Augustus_model.g32234.t1
Valid prediction for GlimmerHMM_glimmerT_48249-T1
Valid prediction for snap_scaffold_21-snap.1825-T1
Valid prediction for GlimmerHMM_glimmerT_48252-T1
Valid prediction for snap_scaffold_21-snap.1838-T1
Valid prediction for snap_scaffold_21-snap.1831-T1
Valid prediction for GlimmerHMM_glimmerT_48248-T1
Valid prediction for GlimmerHMM_glimmerT_48259-T1
Valid prediction for GlimmerHMM_glimmerT_48254-T1
Valid prediction for snap_scaffold_21-snap.1846-T1
Valid prediction for snap_scaffold_21-snap.1842-T1
Valid prediction for snap_scaffold_21-snap.1844-T1
Valid prediction for snap_scaffold_21-snap.1839-T1
Valid prediction for GlimmerHMM_glimmerT_48247-T1
Valid prediction for snap_scaffold_21-snap.1827-T1
Valid prediction for snap_scaffold_21-snap.1829-T1
Valid prediction for GlimmerHMM_glimmerT_48251-T1
Valid prediction for GlimmerHMM_glimmerT_48256-T1
Valid prediction for Augustus_model.g32241.t1
Valid prediction for GlimmerHMM_glimmerT_48261-T1
Valid prediction for snap_scaffold_21-snap.1847-T1
Valid prediction for Augustus_model.g32235.t1
Valid prediction for snap_scaffold_21-snap.1834-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.1826-T1
Couldn't classify 16813, 16988
Couldn't classify 17186, 17324
Sorry, prediction pasa_asmbl_28232.p1 fails validation.
(CAT)	 AG	16813-16988	GT	AGG
(TGA)	 AG	17186-17324	TC	GCT
-recovered pasa_asmbl_28232.p1, internal, 16813, 16988
Couldn't classify 14272, 14334
Couldn't classify 15777, 15880
Sorry, prediction pasa_asmbl_27939.p1 fails validation.
(AAC)	 CC	14272-14334	GT	AGG
(CTC)	 AG	14477-14611	GT	AGG
(TGT)	 AG	14676-14864	GT	GGG
(CAT)	 AG	15142-15317	GT	AGG
(TGA)	 AG	15515-15672	GT	TGG
(TGG)	 AG	15777-15880	AA	CCA
-recovered pasa_asmbl_27939.p1, internal, 14477, 14611
-recovered pasa_asmbl_27939.p1, internal, 14676, 14864
-recovered pasa_asmbl_27939.p1, internal, 15142, 15317
-recovered pasa_asmbl_27939.p1, internal, 15515, 15672
Valid prediction for Augustus_model.g32233.t1
Valid prediction for Augustus_model.g32232.t1
Valid prediction for snap_scaffold_21-snap.1837-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48257-T1
Valid prediction for Augustus_model.g32237.t1
Valid prediction for GlimmerHMM_glimmerT_48255-T1
Valid prediction for snap_scaffold_21-snap.1841-T1
Valid prediction for snap_scaffold_21-snap.1832-T1
Valid prediction for snap_scaffold_21-snap.1835-T1
Valid prediction for Augustus_model.g32238.t1
Valid prediction for GlimmerHMM_glimmerT_48260-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48250-T1
Valid prediction for snap_scaffold_21-snap.1833-T1
Valid prediction for CodingQuarry_transcript_32680-T1
Valid prediction for Augustus_model.g32236.t1
Valid prediction for GlimmerHMM_glimmerT_48253-T1
Valid prediction for GlimmerHMM_glimmerT_48246-T1
Valid prediction for snap_scaffold_21-snap.1828-T1
Couldn't classify 10383, 10533
Sorry, prediction pasa_asmbl_27940.p1 fails validation.
(ATG)	 AC	9520-9603	GT	AGG
(AGG)	 AG	9840-9954	GT	AGG
(GAC)	 AG	10049-10154	GT	CGG
(AGG)	 AG	10383-10533	CA	AGC
-recovered pasa_asmbl_27940.p1, initial, 9520, 9603
-recovered pasa_asmbl_27940.p1, internal, 9840, 9954
-recovered pasa_asmbl_27940.p1, internal, 10049, 10154
Valid prediction for snap_scaffold_21-snap.1830-T1
Valid prediction for snap_scaffold_21-snap.1843-T1
Valid prediction for Augustus_model.g32239.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23641, rend_intergenic: 2511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26455, rend_intergenic: 24963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34000, rend_intergenic: 26539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34389, rend_intergenic: 34236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37494, rend_intergenic: 35179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44687, rend_intergenic: 37998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52617, rend_intergenic: 44843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56813, rend_intergenic: 53218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76167, rend_intergenic: 59343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78266, rend_intergenic: 76990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100242, rend_intergenic: 90404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 108997
-exon list size: 283


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.6    
6.0    
6.3    
6.7    
7.0    
7.4    
7.7    
8.1    
8.4    
8.8    
9.1    
9.5    
9.8    
10.2    
10.5    
10.9    
11.2    
11.6    
11.9    
12.3    
12.6    
13.0    
13.3    
13.7    
14.0    
14.4    
14.7    
15.1    
15.4    
15.8    
16.1    
16.5    
16.8    
17.2    
17.5    
17.9    
18.2    
18.6    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.4    
21.8    
22.1    
22.5    
22.8    
23.2    
23.5    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.7    
27.0    
27.4    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.8    
30.2    
30.5    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.1    
35.4    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.9    
38.2    
38.6    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.4    
41.8    
42.1    
42.5    
42.8    
43.2    
43.5    
43.9    
44.2    
44.6    
44.9    
45.3    
45.6    
46.0    
46.3    
46.7    
47.0    
47.4    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.6    
53.0    
53.3    
53.7    
54.0    
54.4    
54.7    
55.1    
55.4    
55.8    
56.1    
56.5    
56.8    
57.2    
57.5    
57.9    
58.2    
58.6    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.4    
61.8    
62.1    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.6    
64.9    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.5    
69.8    
70.2    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.6    
73.0    
73.3    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.5    
76.8    
77.2    
77.5    
77.9    
78.2    
78.6    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.4    
81.8    
82.1    
82.5    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
84.9    
85.3    
85.6    
86.0    
86.3    
86.7    
87.0    
87.4    
87.7    
88.1    
88.4    
88.8    
89.1    
89.5    
89.8    
90.2    
90.5    
90.9    
91.2    
91.6    
91.9    
92.3    
92.6    
93.0    
93.3    
93.7    
94.0    
94.4    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 23641, rend_intergenic: 2511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26455, rend_intergenic: 24963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34000, rend_intergenic: 26539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34389, rend_intergenic: 34236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37494, rend_intergenic: 35179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44687, rend_intergenic: 37998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52617, rend_intergenic: 44843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56813, rend_intergenic: 53218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76167, rend_intergenic: 59343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78266, rend_intergenic: 76990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100242, rend_intergenic: 90404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support