-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_7907502-8095650

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.1685-T1
Valid prediction for CodingQuarry_transcript_32651-T1
Valid prediction for pasa_asmbl_28776.p1
Valid prediction for pasa_asmbl_28782.p1
Valid prediction for snap_scaffold_21-snap.1700-T1
Couldn't classify 165501, 165554
Couldn't classify 166367, 166615
Sorry, prediction pasa_asmbl_28785.p1 fails validation.
(TGT)	 AC	165501-165554	GT	AGG
(GTG)	 AG	166037-166177	GT	AGG
(GAG)	 AG	166367-166615	TG	AGT
-recovered pasa_asmbl_28785.p1, internal, 166037, 166177
Valid prediction for pasa_asmbl_28774.p1
Valid prediction for snap_scaffold_21-snap.1704-T1
Valid prediction for snap_scaffold_21-snap.1695-T1
Valid prediction for GlimmerHMM_glimmerT_48150-T1
Valid prediction for HiQ_model.g32149.t1
Valid prediction for HiQ_model.g32153.t1
Valid prediction for Augustus_model.g32141.t1
Valid prediction for GlimmerHMM_glimmerT_48145-T1
Valid prediction for snap_scaffold_21-snap.1683-T1
Valid prediction for GlimmerHMM_glimmerT_48139-T1
Valid prediction for GlimmerHMM_glimmerT_48132-T1
Valid prediction for CodingQuarry_transcript_32649-T1
Valid prediction for snap_scaffold_21-snap.1706-T1
Valid prediction for HiQ_model.g32139.t1
Valid prediction for Augustus_model.g32158.t1
Valid prediction for pasa_asmbl_28787.p1
Valid prediction for Augustus_model.g32156.t1
Valid prediction for GlimmerHMM_glimmerT_48130-T1
Valid prediction for CodingQuarry_transcript_32650-T1
Valid prediction for GlimmerHMM_glimmerT_48134-T1
Valid prediction for Augustus_model.g32150.t1
Valid prediction for Augustus_model.g32162.t1
Valid prediction for snap_scaffold_21-snap.1687-T1
Valid prediction for Augustus_model.g32159.t1
Valid prediction for snap_scaffold_21-snap.1672-T1
Valid prediction for GlimmerHMM_glimmerT_48142-T1
Valid prediction for snap_scaffold_21-snap.1705-T1
Valid prediction for snap_scaffold_21-snap.1707-T1
Valid prediction for GlimmerHMM_glimmerT_48140-T1
Valid prediction for snap_scaffold_21-snap.1698-T1
Valid prediction for HiQ_model.g32154.t1
Valid prediction for snap_scaffold_21-snap.1690-T1
Valid prediction for Augustus_model.g32151.t1
Valid prediction for snap_scaffold_21-snap.1691-T1
Valid prediction for GlimmerHMM_glimmerT_48143-T1
Valid prediction for GlimmerHMM_glimmerT_48146-T1
Valid prediction for GlimmerHMM_glimmerT_48151-T1
Valid prediction for HiQ_model.g32163.t1
Valid prediction for Augustus_model.g32161.t1
Valid prediction for GlimmerHMM_glimmerT_48138-T1
Valid prediction for snap_scaffold_21-snap.1686-T1
Valid prediction for snap_scaffold_21-snap.1693-T1
Valid prediction for snap_scaffold_21-snap.1673-T1
Valid prediction for CodingQuarry_transcript_32648-T1
Valid prediction for snap_scaffold_21-snap.1689-T1
Valid prediction for snap_scaffold_21-snap.1688-T1
Valid prediction for snap_scaffold_21-snap.1702-T1
Valid prediction for Augustus_model.g32155.t1
Couldn't classify 16774, 16826
Sorry, prediction pasa_asmbl_28771.p1 fails validation.
(CAG)	 CA	16774-16826	GT	AGG
(GCT)	 AG	19569-19635	GT	TGG
(CTG)	 AG	21225-21303	GT	AGG
(GCG)	 AG	22245-22345	GT	TGG
(GTG)	 AG	22627-22833	AG	GAA
-recovered pasa_asmbl_28771.p1, terminal, 22627, 22833
-recovered pasa_asmbl_28771.p1, internal, 19569, 19635
-recovered pasa_asmbl_28771.p1, internal, 21225, 21303
-recovered pasa_asmbl_28771.p1, internal, 22245, 22345
Couldn't classify 158130, 158375
Sorry, prediction pasa_asmbl_28784.p1 fails validation.
(ATG)	 GC	157261-157416	GT	AGG
(GAC)	 AG	158130-158375	AC	ACA
-recovered pasa_asmbl_28784.p1, initial, 157261, 157416
Valid prediction for snap_scaffold_21-snap.1676-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_48128-T1
Valid prediction for GlimmerHMM_glimmerT_48152-T1
Valid prediction for pasa_asmbl_27882.p1
Valid prediction for Augustus_model.g32146.t1
Valid prediction for snap_scaffold_21-snap.1675-T1
Valid prediction for Augustus_model.g32147.t1
Valid prediction for Augustus_model.g32160.t1
Valid prediction for pasa_asmbl_27866.p1
Valid prediction for CodingQuarry_transcript_32643-T1
Valid prediction for snap_scaffold_21-snap.1671-T1
Valid prediction for snap_scaffold_21-snap.1677-T1
Valid prediction for snap_scaffold_21-snap.1701-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_32652-T1
Valid prediction for CodingQuarry_transcript_32642-T1
Valid prediction for HiQ_model.g32137.t1
Valid prediction for GlimmerHMM_glimmerT_48144-T1
Valid prediction for snap_scaffold_21-snap.1684-T1
Couldn't classify 156543, 156659
Sorry, prediction pasa_asmbl_27869.p1 fails validation.
(AGT)	 AC	156543-156659	GT	AGG
(GTG)	 AG	157606-157696	GT	AGG
(GAT)	 AG	158004-158100	GT	AGG
(GTA)	 AG	158604-158718	CA	GAC
-recovered pasa_asmbl_27869.p1, terminal, 158604, 158718
-recovered pasa_asmbl_27869.p1, internal, 157606, 157696
-recovered pasa_asmbl_27869.p1, internal, 158004, 158100
Valid prediction for GlimmerHMM_glimmerT_48149-T1
Valid prediction for pasa_asmbl_27886.p2
Valid prediction for Augustus_model.g32142.t1
Valid prediction for snap_scaffold_21-snap.1699-T1
Valid prediction for GlimmerHMM_glimmerT_48141-T1
Valid prediction for pasa_asmbl_27888.p1
Valid prediction for GlimmerHMM_glimmerT_48129-T1
Valid prediction for snap_scaffold_21-snap.1670-T1
Valid prediction for GlimmerHMM_glimmerT_48137-T1
Valid prediction for HiQ_model.g32164.t1
Valid prediction for snap_scaffold_21-snap.1678-T1
Valid prediction for HiQ_model.g32152.t1
Valid prediction for Augustus_model.g32145.t1
Valid prediction for snap_scaffold_21-snap.1697-T1
Valid prediction for GlimmerHMM_glimmerT_48147-T1
Valid prediction for snap_scaffold_21-snap.1679-T1
Valid prediction for CodingQuarry_transcript_32647-T1
Valid prediction for snap_scaffold_21-snap.1703-T1
Valid prediction for GlimmerHMM_glimmerT_48135-T1
Valid prediction for snap_scaffold_21-snap.1681-T1
Valid prediction for GlimmerHMM_glimmerT_48131-T1
Valid prediction for snap_scaffold_21-snap.1680-T1
Valid prediction for GlimmerHMM_glimmerT_48133-T1
Couldn't classify 113845, 113964
Couldn't classify 115839, 115881
Sorry, prediction pasa_asmbl_27877.p1 fails validation.
(GAG)	 AT	113845-113964	GT	AGG
(TTT)	 AG	114176-114276	GT	AGG
(GGA)	 AG	114481-114614	GT	GGG
(ACA)	 AG	114882-114990	GT	AGG
(TCT)	 AG	115088-115151	GT	AAG
(CAT)	 AG	115247-115333	GT	GGG
(TTC)	 AG	115543-115640	GT	AGG
(GTA)	 AG	115839-115881	TG	GCT
-recovered pasa_asmbl_27877.p1, internal, 114176, 114276
-recovered pasa_asmbl_27877.p1, internal, 114481, 114614
-recovered pasa_asmbl_27877.p1, internal, 114882, 114990
-recovered pasa_asmbl_27877.p1, internal, 115088, 115151
-recovered pasa_asmbl_27877.p1, internal, 115247, 115333
-recovered pasa_asmbl_27877.p1, internal, 115543, 115640
Valid prediction for snap_scaffold_21-snap.1674-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g32136.t1
Valid prediction for pasa_asmbl_27876.p2
Valid prediction for HiQ_model.g32148.t1
Valid prediction for GlimmerHMM_glimmerT_48136-T1
Valid prediction for GlimmerHMM_glimmerT_48148-T1
Valid prediction for snap_scaffold_21-snap.1708-T1
Valid prediction for snap_scaffold_21-snap.1694-T1
Valid prediction for snap_scaffold_21-snap.1682-T1
Valid prediction for Augustus_model.g32143.t1
Valid prediction for Augustus_model.g32140.t1
Valid prediction for snap_scaffold_21-snap.1692-T1
Valid prediction for snap_scaffold_21-snap.1696-T1
Valid prediction for HiQ_model.g32144.t1
Valid prediction for Augustus_model.g32138.t1
Couldn't classify 146338, 146676
Sorry, prediction pasa_asmbl_27873.p1 fails validation.
(GGC)	 CT	146338-146676	TA	CCT
Valid prediction for Augustus_model.g32157.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17207, rend_intergenic: 14394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23311, rend_intergenic: 20657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69949, rend_intergenic: 65988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123498, rend_intergenic: 122109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126265, rend_intergenic: 125600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129475, rend_intergenic: 126941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135040, rend_intergenic: 132594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136560, rend_intergenic: 135085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137575, rend_intergenic: 136681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143640, rend_intergenic: 137742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147239, rend_intergenic: 147031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151193, rend_intergenic: 147445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 188149
-exon list size: 350


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.8    
3.1    
3.4    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.6    
96.9    
97.2    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 17207, rend_intergenic: 14394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23311, rend_intergenic: 20657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69949, rend_intergenic: 65988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123498, rend_intergenic: 122109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126265, rend_intergenic: 125600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129475, rend_intergenic: 126941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135040, rend_intergenic: 132594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136560, rend_intergenic: 135085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137575, rend_intergenic: 136681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143640, rend_intergenic: 137742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147239, rend_intergenic: 147031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151193, rend_intergenic: 147445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support