-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_7401859-7582570

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12290, 12493
Couldn't classify 12633, 12737
Sorry, prediction pasa_asmbl_28948.p1 fails validation.
(GCC)	 AG	12290-12493	GT	AGG
(AGG)	 AG	12633-12737	GC	GGG
-recovered pasa_asmbl_28948.p1, internal, 12290, 12493
-recovered pasa_asmbl_28948.p1, internal, 12633, 12737
Valid prediction for snap_scaffold_21-snap.1576-T1
Valid prediction for CodingQuarry_transcript_32621-T1
Valid prediction for GlimmerHMM_glimmerT_48075-T1
Valid prediction for snap_scaffold_21-snap.1552-T1
Valid prediction for snap_scaffold_21-snap.1561-T1
Valid prediction for snap_scaffold_21-snap.1549-T1
Valid prediction for GlimmerHMM_glimmerT_48068-T1
Couldn't classify 88179, 88259
Sorry, prediction pasa_asmbl_28741.p1 fails validation.
(GAT)	 AG	88179-88259	GT	AGG
(GGT)	 AG	89133-89255	GT	TGG
(ACT)	 AG	89414-89539	GT	AGG
(AGG)	 AG	89671-89796	GT	TGG
(GGG)	 AG	90539-90590	GT	AGG
(AAA)	 AG	90684-90710	GT	AGG
(TCT)	 AG	90815-90841	GT	AGG
(TTG)	 AG	90964-91055	GT	AGG
(GTG)	 AG	91170-91598	AC	AAA
-recovered pasa_asmbl_28741.p1, terminal, 90539, 90590
-recovered pasa_asmbl_28741.p1, terminal, 91170, 91598
-recovered pasa_asmbl_28741.p1, internal, 88179, 88259
-recovered pasa_asmbl_28741.p1, internal, 89133, 89255
-recovered pasa_asmbl_28741.p1, internal, 89414, 89539
-recovered pasa_asmbl_28741.p1, internal, 89671, 89796
-recovered pasa_asmbl_28741.p1, internal, 90539, 90590
-recovered pasa_asmbl_28741.p1, internal, 90684, 90710
-recovered pasa_asmbl_28741.p1, internal, 90815, 90841
-recovered pasa_asmbl_28741.p1, internal, 90964, 91055
Valid prediction for snap_scaffold_21-snap.1569-T1
Valid prediction for Augustus_model.g32104.t1
Valid prediction for snap_scaffold_21-snap.1581-T1
Valid prediction for snap_scaffold_21-snap.1563-T1
Couldn't classify 41723, 41743
Sorry, prediction pasa_asmbl_28734.p1 fails validation.
(ATG)	 CT	38343-38498	GT	AGG
(GAT)	 AG	38701-38787	GT	AGG
(CCG)	 AG	38911-39064	GT	AGG
(CTC)	 AG	39295-39351	GT	TGG
(CCC)	 AG	39437-39556	GT	AGG
(GTA)	 AG	39783-39904	GT	CTG
(GAG)	 AG	40044-40121	GT	GGG
(GTG)	 AG	40246-40347	GT	ACG
(CTG)	 AG	40528-40710	GT	AGG
(AGC)	 AG	40840-40914	GT	ACG
(GTC)	 AG	41003-41128	GT	TGG
(AAA)	 AG	41430-41603	GT	AGG
(CCC)	 AG	41723-41743	AC	TGA
-recovered pasa_asmbl_28734.p1, initial, 38343, 38498
-recovered pasa_asmbl_28734.p1, internal, 38701, 38787
-recovered pasa_asmbl_28734.p1, internal, 38911, 39064
-recovered pasa_asmbl_28734.p1, internal, 39295, 39351
-recovered pasa_asmbl_28734.p1, internal, 39437, 39556
-recovered pasa_asmbl_28734.p1, internal, 39783, 39904
-recovered pasa_asmbl_28734.p1, internal, 40044, 40121
-recovered pasa_asmbl_28734.p1, internal, 40246, 40347
-recovered pasa_asmbl_28734.p1, internal, 40528, 40710
-recovered pasa_asmbl_28734.p1, internal, 40840, 40914
-recovered pasa_asmbl_28734.p1, internal, 41003, 41128
-recovered pasa_asmbl_28734.p1, internal, 41430, 41603
Valid prediction for Augustus_model.g32098.t1
Valid prediction for GlimmerHMM_glimmerT_48073-T1
Valid prediction for GlimmerHMM_glimmerT_48063-T1
Valid prediction for HiQ_model.g32078.t1
Valid prediction for snap_scaffold_21-snap.1574-T1
Valid prediction for HiQ_model.g32077.t1
Valid prediction for GlimmerHMM_glimmerT_48043-T1
Couldn't classify 16650, 16694
Sorry, prediction pasa_asmbl_29011.p1 fails validation.
(GGC)	 CT	16650-16694	GT	AGG
(GGC)	 AG	16843-16941	GT	CGG
(ATC)	 AG	17038-17148	GT	AGG
(ATT)	 AG	17287-17448	CT	GAC
-recovered pasa_asmbl_29011.p1, terminal, 17287, 17448
-recovered pasa_asmbl_29011.p1, internal, 16843, 16941
-recovered pasa_asmbl_29011.p1, internal, 17038, 17148
Valid prediction for GlimmerHMM_glimmerT_48044-T1
Valid prediction for snap_scaffold_21-snap.1579-T1
Valid prediction for pasa_asmbl_28740.p1
Valid prediction for GlimmerHMM_glimmerT_48058-T1
Valid prediction for GlimmerHMM_glimmerT_48053-T1
Valid prediction for Augustus_model.g32080.t1
Couldn't classify 161039, 161203
Couldn't classify 161414, 161557
Sorry, prediction pasa_asmbl_29021.p1 fails validation.
(CAC)	 TG	161039-161203	GT	AGG
(ATG)	 AG	161414-161557	AC	GCA
Couldn't classify 138726, 139353
Sorry, prediction pasa_asmbl_28748.p1 fails validation.
(ATG)	 TC	138264-138373	GT	AGG
(AGC)	 AG	138726-139353	GA	TGG
-recovered pasa_asmbl_28748.p1, initial, 138264, 138373
Valid prediction for pasa_asmbl_28750.p1
Valid prediction for snap_scaffold_21-snap.1543-T1
Valid prediction for GlimmerHMM_glimmerT_48060-T1
Valid prediction for GlimmerHMM_glimmerT_48054-T1
Valid prediction for Augustus_model.g32100.t1
Valid prediction for GlimmerHMM_glimmerT_48064-T1
Valid prediction for pasa_asmbl_28749.p1
Valid prediction for Augustus_model.g32084.t1
Valid prediction for GlimmerHMM_glimmerT_48045-T1
Valid prediction for Augustus_model.g32094.t1
Valid prediction for pasa_asmbl_28984.p1
Valid prediction for Augustus_model.g32073.t1
Valid prediction for snap_scaffold_21-snap.1575-T1
Valid prediction for Augustus_model.g32101.t1
Valid prediction for snap_scaffold_21-snap.1556-T1
Valid prediction for GlimmerHMM_glimmerT_48066-T1
Valid prediction for HiQ_model.g32087.t1
Valid prediction for GlimmerHMM_glimmerT_48061-T1
Valid prediction for Augustus_model.g32083.t1
Valid prediction for GlimmerHMM_glimmerT_48069-T1
Valid prediction for snap_scaffold_21-snap.1568-T1
Valid prediction for GlimmerHMM_glimmerT_48049-T1
Valid prediction for pasa_asmbl_28736.p1
Valid prediction for Augustus_model.g32089.t1
Couldn't classify 115518, 115543
Sorry, prediction pasa_asmbl_28746.p1 fails validation.
(ATA)	 TG	115518-115543	GT	AGG
(ATC)	 AG	116549-116597	GT	AGG
(AGC)	 AG	116758-116890	GT	GGG
(GTT)	 AG	116999-117138	GT	AAG
(ATC)	 AG	117252-117420	GT	GGG
(CCT)	 AG	117632-117741	GT	AGG
(GTG)	 AG	118139-118282	GT	AGG
(GAA)	 AG	118627-118764	GT	TGG
(CAT)	 AG	119124-119213	GT	TGG
(GCC)	 AG	119535-119614	GT	AGG
(GAT)	 AG	119779-119923	GC	AAG
-recovered pasa_asmbl_28746.p1, terminal, 119779, 119923
-recovered pasa_asmbl_28746.p1, internal, 116549, 116597
-recovered pasa_asmbl_28746.p1, internal, 116758, 116890
-recovered pasa_asmbl_28746.p1, internal, 116999, 117138
-recovered pasa_asmbl_28746.p1, internal, 117252, 117420
-recovered pasa_asmbl_28746.p1, internal, 117632, 117741
-recovered pasa_asmbl_28746.p1, internal, 118139, 118282
-recovered pasa_asmbl_28746.p1, internal, 118627, 118764
-recovered pasa_asmbl_28746.p1, internal, 119124, 119213
-recovered pasa_asmbl_28746.p1, internal, 119535, 119614
-recovered pasa_asmbl_28746.p1, internal, 119779, 119923
Valid prediction for snap_scaffold_21-snap.1584-T1
Couldn't classify 41870, 41914
Sorry, prediction pasa_asmbl_28735.p3 fails validation.
(TAC)	 AA	41870-41914	GT	AGG
(GTC)	 AG	42071-42361	GA	GAG
-recovered pasa_asmbl_28735.p3, terminal, 42071, 42361
Valid prediction for snap_scaffold_21-snap.1555-T1
Valid prediction for Augustus_model.g32096.t1
Valid prediction for snap_scaffold_21-snap.1560-T1
Valid prediction for CodingQuarry_transcript_32618-T1
Valid prediction for HiQ_model.g32095.t1
Couldn't classify 139063, 139428
Sorry, prediction CodingQuarry_transcript_32630-T1 fails validation.
(ATG)	 AG	139063-139428	GA	CTG
(GAG)	 AG	139450-139847	GT	AGG
(CGA)	 AG	139960-140106	GT	GGG
(GAA)	 AG	140219-140353	GT	AGG
(GAG)	 AG	140557-140636	GT	TGG
(ATT)	 AG	140783-140923	GT	TGG
(GGC)	 AG	141171-141406	CC	GAC
-recovered CodingQuarry_transcript_32630-T1, terminal, 141171, 141406
-recovered CodingQuarry_transcript_32630-T1, internal, 139450, 139847
-recovered CodingQuarry_transcript_32630-T1, internal, 139960, 140106
-recovered CodingQuarry_transcript_32630-T1, internal, 140219, 140353
-recovered CodingQuarry_transcript_32630-T1, internal, 140557, 140636
-recovered CodingQuarry_transcript_32630-T1, internal, 140783, 140923
Valid prediction for snap_scaffold_21-snap.1550-T1
Valid prediction for GlimmerHMM_glimmerT_48050-T1
Valid prediction for Augustus_model.g32103.t1
Valid prediction for snap_scaffold_21-snap.1572-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_48074-T1
Valid prediction for snap_scaffold_21-snap.1566-T1
Valid prediction for pasa_asmbl_27829.p1
Valid prediction for CodingQuarry_transcript_32616-T1
Valid prediction for GlimmerHMM_glimmerT_48062-T1
Valid prediction for GlimmerHMM_glimmerT_48072-T1
Valid prediction for pasa_asmbl_27821.p1
Valid prediction for Augustus_model.g32079.t1
Valid prediction for Augustus_model.g32099.t1
Valid prediction for snap_scaffold_21-snap.1544-T1
Valid prediction for CodingQuarry_transcript_32622-T1
Valid prediction for snap_scaffold_21-snap.1553-T1
Valid prediction for HiQ_model.g32082.t1
Valid prediction for Augustus_model.g32076.t1
Valid prediction for GlimmerHMM_glimmerT_48042-T1
Valid prediction for snap_scaffold_21-snap.1582-T1
Valid prediction for snap_scaffold_21-snap.1545-T1
Valid prediction for GlimmerHMM_glimmerT_48071-T1
Valid prediction for HiQ_model.g32088.t1
Valid prediction for HiQ_model.g32097.t1
Valid prediction for snap_scaffold_21-snap.1551-T1
Valid prediction for Augustus_model.g32086.t1
Valid prediction for pasa_asmbl_27828.p1
Valid prediction for snap_scaffold_21-snap.1562-T1
Valid prediction for snap_scaffold_21-snap.1571-T1
Valid prediction for GlimmerHMM_glimmerT_48051-T1
Valid prediction for GlimmerHMM_glimmerT_48047-T1
Valid prediction for GlimmerHMM_glimmerT_48057-T1
Valid prediction for Augustus_model.g32081.t1
Valid prediction for CodingQuarry_transcript_32627-T1
Valid prediction for GlimmerHMM_glimmerT_48065-T1
Valid prediction for GlimmerHMM_glimmerT_48059-T1
Valid prediction for Augustus_model.g32102.t1
Valid prediction for CodingQuarry_transcript_32625-T1
Valid prediction for GlimmerHMM_glimmerT_48067-T1
Couldn't classify 44859, 45006
Sorry, prediction pasa_asmbl_27840.p1 fails validation.
(ATG)	 TC	43411-43465	GT	AGG
(GAG)	 AG	43954-44212	GT	AGG
(TGA)	 AG	44536-44673	GT	AAG
(CAC)	 AG	44859-45006	TA	ACT
-recovered pasa_asmbl_27840.p1, initial, 43411, 43465
-recovered pasa_asmbl_27840.p1, internal, 43954, 44212
-recovered pasa_asmbl_27840.p1, internal, 44536, 44673
Valid prediction for CodingQuarry_transcript_32628-T1
Valid prediction for snap_scaffold_21-snap.1558-T1
Couldn't classify 120902, 120955
Sorry, prediction pasa_asmbl_27819.p1 fails validation.
(TCC)	 TA	120902-120955	GT	CGG
(AAA)	 AG	121236-121368	GT	CGG
(AAC)	 AG	121593-121669	GT	AGG
(GAG)	 AG	121783-121888	GT	AGG
(ATG)	 AG	122343-122437	GA	GAG
-recovered pasa_asmbl_27819.p1, terminal, 122343, 122437
-recovered pasa_asmbl_27819.p1, internal, 121236, 121368
-recovered pasa_asmbl_27819.p1, internal, 121593, 121669
-recovered pasa_asmbl_27819.p1, internal, 121783, 121888
Valid prediction for snap_scaffold_21-snap.1564-T1
Couldn't classify 83250, 83251
Sorry, prediction CodingQuarry_transcript_32624-T1 fails validation.
(ATG)	 TT	83250-83251	GT	ATG
(GGC)	 AG	83490-83517	GT	ATG
(TGT)	 AG	83736-83951	GT	CGG
(TAC)	 AG	85714-85900	GT	AGG
(GTC)	 AG	86070-86182	GT	AGG
(GTG)	 AG	86381-86490	GT	GAG
(GGG)	 AG	86771-86901	GT	CAG
(CTG)	 AG	87120-87208	GT	AGG
(GTT)	 AG	87428-87531	GT	CCG
(ACC)	 AG	87721-87817	GG	AAG
-recovered CodingQuarry_transcript_32624-T1, terminal, 87721, 87817
-recovered CodingQuarry_transcript_32624-T1, internal, 83490, 83517
-recovered CodingQuarry_transcript_32624-T1, internal, 83736, 83951
-recovered CodingQuarry_transcript_32624-T1, internal, 85714, 85900
-recovered CodingQuarry_transcript_32624-T1, internal, 86070, 86182
-recovered CodingQuarry_transcript_32624-T1, internal, 86381, 86490
-recovered CodingQuarry_transcript_32624-T1, internal, 86771, 86901
-recovered CodingQuarry_transcript_32624-T1, internal, 87120, 87208
-recovered CodingQuarry_transcript_32624-T1, internal, 87428, 87531
Valid prediction for pasa_asmbl_27807.p1
Valid prediction for GlimmerHMM_glimmerT_48046-T1
Valid prediction for GlimmerHMM_glimmerT_48070-T1
Valid prediction for Augustus_model.g32075.t1
Valid prediction for snap_scaffold_21-snap.1573-T1
Valid prediction for HiQ_model.g32092.t1
Valid prediction for HiQ_model.g32090.t1
Valid prediction for CodingQuarry_transcript_32619-T1
Valid prediction for CodingQuarry_transcript_32620-T1
Valid prediction for snap_scaffold_21-snap.1585-T1
Valid prediction for snap_scaffold_21-snap.1577-T1
Valid prediction for snap_scaffold_21-snap.1547-T1
Couldn't classify 51292, 51406
Sorry, prediction pasa_asmbl_27839.p1 fails validation.
(AAG)	 GA	51292-51406	GT	CGG
(TTC)	 AG	51645-51710	GT	AGG
(CAC)	 AG	51798-51930	GT	AGG
(TGC)	 AG	52089-52174	GT	AGG
(GGC)	 AG	52385-52503	GT	AGG
(GCA)	 AG	52599-52709	GT	AGG
(GAG)	 AG	52927-53049	AC	AGA
add_exon() Sorry, pasa_asmbl_27839.p1 51645-51710-terminal-1 is invalid.
-recovered pasa_asmbl_27839.p1, terminal, 51645, 51710
-recovered pasa_asmbl_27839.p1, terminal, 52927, 53049
-recovered pasa_asmbl_27839.p1, internal, 51645, 51710
-recovered pasa_asmbl_27839.p1, internal, 51798, 51930
-recovered pasa_asmbl_27839.p1, internal, 52089, 52174
-recovered pasa_asmbl_27839.p1, internal, 52385, 52503
-recovered pasa_asmbl_27839.p1, internal, 52599, 52709
Couldn't classify 150889, 150904
Couldn't classify 151870, 151946
Sorry, prediction pasa_asmbl_27817.p1 fails validation.
(AGC)	 AG	150889-150904	GT	TGG
(GCC)	 AG	151003-151129	GT	AGG
(GTT)	 AG	151291-151381	GT	GGG
(GCT)	 AG	151591-151660	GT	GGG
(AGA)	 AG	151870-151946	AT	CCA
-recovered pasa_asmbl_27817.p1, internal, 150889, 150904
-recovered pasa_asmbl_27817.p1, internal, 151003, 151129
-recovered pasa_asmbl_27817.p1, internal, 151291, 151381
-recovered pasa_asmbl_27817.p1, internal, 151591, 151660
Valid prediction for snap_scaffold_21-snap.1583-T1
Valid prediction for snap_scaffold_21-snap.1570-T1
Valid prediction for GlimmerHMM_glimmerT_48048-T1
Valid prediction for snap_scaffold_21-snap.1557-T1
Valid prediction for pasa_asmbl_27838.p1
Valid prediction for pasa_asmbl_27822.p1
Valid prediction for CodingQuarry_transcript_32626-T1
Couldn't classify 152665, 152794
Couldn't classify 153749, 153897
Sorry, prediction pasa_asmbl_27815.p1 fails validation.
(CCC)	 AG	152665-152794	GT	ACG
(GGT)	 AG	152892-153023	GT	AGG
(GCT)	 AG	153179-153355	GT	TTG
(ACA)	 AG	153452-153670	GT	AGG
(GGA)	 AG	153749-153897	CA	AGC
add_exon() Sorry, pasa_asmbl_27815.p1 152892-153023-terminal-1 is invalid.
-recovered pasa_asmbl_27815.p1, terminal, 152892, 153023
-recovered pasa_asmbl_27815.p1, internal, 152665, 152794
-recovered pasa_asmbl_27815.p1, internal, 152892, 153023
-recovered pasa_asmbl_27815.p1, internal, 153179, 153355
-recovered pasa_asmbl_27815.p1, internal, 153452, 153670
Valid prediction for GlimmerHMM_glimmerT_48056-T1
Valid prediction for CodingQuarry_transcript_32623-T1
Valid prediction for snap_scaffold_21-snap.1559-T1
Valid prediction for snap_scaffold_21-snap.1578-T1
Valid prediction for snap_scaffold_21-snap.1542-T1
Valid prediction for snap_scaffold_21-snap.1567-T1
Valid prediction for GlimmerHMM_glimmerT_48055-T1
Couldn't classify 147117, 147397
Sorry, prediction pasa_asmbl_28182.p1 fails validation.
(ATG)	 AT	146590-146632	GT	AGG
(GCA)	 AG	146710-146766	GT	AGG
(AAC)	 AG	146867-146905	GT	AGG
(AAA)	 AG	146987-147043	GT	TGG
(GAC)	 AG	147117-147397	CA	ATC
-recovered pasa_asmbl_28182.p1, initial, 146590, 146632
-recovered pasa_asmbl_28182.p1, internal, 146710, 146766
-recovered pasa_asmbl_28182.p1, internal, 146867, 146905
-recovered pasa_asmbl_28182.p1, internal, 146987, 147043
Valid prediction for CodingQuarry_transcript_32629-T1
Valid prediction for snap_scaffold_21-snap.1580-T1
Valid prediction for GlimmerHMM_glimmerT_48052-T1
Valid prediction for snap_scaffold_21-snap.1565-T1
Valid prediction for HiQ_model.g32074.t1
Valid prediction for snap_scaffold_21-snap.1548-T1
Valid prediction for pasa_asmbl_27835.p1
Valid prediction for Augustus_model.g32093.t1
Valid prediction for Augustus_model.g32085.t1
Valid prediction for HiQ_model.g32091.t1
Valid prediction for snap_scaffold_21-snap.1546-T1
Valid prediction for snap_scaffold_21-snap.1554-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 91598, rend_intergenic: 91595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17448, rend_intergenic: 16522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68607, rend_intergenic: 66590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80364, rend_intergenic: 76768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152174, rend_intergenic: 147022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153871, rend_intergenic: 152260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161625, rend_intergenic: 157887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178116, rend_intergenic: 177466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180712
-exon list size: 526


building trellis

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16.9    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.1    
24.2    
24.4    
24.6    
24.8    
25.0    
25.2    
25.4    
25.6    
25.8    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.8    
85.0    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.7    
86.9    
87.1    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.2    
99.4    
99.6    
99.8    
-found 39 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 91598, rend_intergenic: 91595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17448, rend_intergenic: 16522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68607, rend_intergenic: 66590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80364, rend_intergenic: 76768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152174, rend_intergenic: 147022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153871, rend_intergenic: 152260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161625, rend_intergenic: 157887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178116, rend_intergenic: 177466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 36 predictions persist after filtering for low support