-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_7069267-7186913

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_47987-T1
Valid prediction for snap_scaffold_21-snap.1476-T1
Valid prediction for snap_scaffold_21-snap.1467-T1
Valid prediction for GlimmerHMM_glimmerT_47986-T1
Valid prediction for snap_scaffold_21-snap.1472-T1
Valid prediction for snap_scaffold_21-snap.1483-T1
Valid prediction for Augustus_model.g32032.t1
Valid prediction for GlimmerHMM_glimmerT_47992-T1
Valid prediction for Augustus_model.g32027.t1
Valid prediction for snap_scaffold_21-snap.1464-T1
Valid prediction for snap_scaffold_21-snap.1469-T1
Valid prediction for snap_scaffold_21-snap.1474-T1
Valid prediction for Augustus_model.g32031.t1
Valid prediction for snap_scaffold_21-snap.1487-T1
Valid prediction for GlimmerHMM_glimmerT_47995-T1
Valid prediction for GlimmerHMM_glimmerT_47988-T1
Valid prediction for snap_scaffold_21-snap.1466-T1
Valid prediction for snap_scaffold_21-snap.1471-T1
Valid prediction for snap_scaffold_21-snap.1478-T1
Valid prediction for snap_scaffold_21-snap.1486-T1
Valid prediction for Augustus_model.g32030.t1
Valid prediction for Augustus_model.g32028.t1
Valid prediction for snap_scaffold_21-snap.1479-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.1461-T1
Valid prediction for Augustus_model.g32037.t1
Valid prediction for snap_scaffold_21-snap.1463-T1
Valid prediction for Augustus_model.g32029.t1
Couldn't classify 46039, 46100
Sorry, prediction pasa_asmbl_28712.p1 fails validation.
(AAG)	 AG	46039-46100	GT	TGG
(GAT)	 AG	46211-46406	GT	AGG
(TAT)	 AG	46580-46702	GT	AGG
(GTG)	 AG	47178-47380	GT	AGG
(GGA)	 AG	47761-47882	GT	AGG
(GTG)	 AG	48060-48196	GT	AGG
(GTG)	 AG	48307-48489	CC	GAC
-recovered pasa_asmbl_28712.p1, terminal, 48307, 48489
-recovered pasa_asmbl_28712.p1, internal, 46039, 46100
-recovered pasa_asmbl_28712.p1, internal, 46211, 46406
-recovered pasa_asmbl_28712.p1, internal, 46580, 46702
-recovered pasa_asmbl_28712.p1, internal, 47178, 47380
-recovered pasa_asmbl_28712.p1, internal, 47761, 47882
-recovered pasa_asmbl_28712.p1, internal, 48060, 48196
Valid prediction for Augustus_model.g32033.t1
Valid prediction for snap_scaffold_21-snap.1475-T1
Valid prediction for snap_scaffold_21-snap.1481-T1
Valid prediction for GlimmerHMM_glimmerT_47983-T1
Valid prediction for snap_scaffold_21-snap.1460-T1
Valid prediction for GlimmerHMM_glimmerT_47985-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.1485-T1
Couldn't classify 52925, 53059
Sorry, prediction pasa_asmbl_27785.p1 fails validation.
(ACG)	 GA	52925-53059	GT	GGG
(GCT)	 AG	53171-53308	GT	AGG
(CAT)	 AG	53429-53518	GG	AGG
-recovered pasa_asmbl_27785.p1, terminal, 53429, 53518
-recovered pasa_asmbl_27785.p1, internal, 53171, 53308
Valid prediction for Augustus_model.g32038.t1
Valid prediction for snap_scaffold_21-snap.1462-T1
Valid prediction for GlimmerHMM_glimmerT_47982-T1
Valid prediction for GlimmerHMM_glimmerT_47984-T1
Valid prediction for snap_scaffold_21-snap.1459-T1
Valid prediction for GlimmerHMM_glimmerT_47991-T1
Couldn't classify 47778, 47937
Couldn't classify 52639, 52725
Sorry, prediction pasa_asmbl_27786.p1 fails validation.
(GTC)	 CC	47778-47937	GT	GAG
(GGA)	 AG	48510-48573	GT	GGG
(AGC)	 AG	50692-50740	GT	AGG
(GTG)	 AG	50920-51032	GT	AGG
(TTA)	 AG	52374-52491	GT	AGG
(TGT)	 AG	52639-52725	TC	GCT
-recovered pasa_asmbl_27786.p1, internal, 48510, 48573
-recovered pasa_asmbl_27786.p1, internal, 50692, 50740
-recovered pasa_asmbl_27786.p1, internal, 50920, 51032
-recovered pasa_asmbl_27786.p1, internal, 52374, 52491
Valid prediction for GlimmerHMM_glimmerT_47993-T1
Valid prediction for Augustus_model.g32039.t1
Valid prediction for snap_scaffold_21-snap.1480-T1
Valid prediction for snap_scaffold_21-snap.1465-T1
Valid prediction for snap_scaffold_21-snap.1458-T1
Valid prediction for snap_scaffold_21-snap.1470-T1
Valid prediction for GlimmerHMM_glimmerT_47990-T1
Valid prediction for snap_scaffold_21-snap.1477-T1
Valid prediction for Augustus_model.g32036.t1
Valid prediction for snap_scaffold_21-snap.1468-T1
Valid prediction for Augustus_model.g32040.t1
Valid prediction for GlimmerHMM_glimmerT_47989-T1
Valid prediction for snap_scaffold_21-snap.1484-T1
Valid prediction for GlimmerHMM_glimmerT_47996-T1
Valid prediction for Augustus_model.g32034.t1
Valid prediction for GlimmerHMM_glimmerT_47997-T1
Couldn't classify 47497, 47637
Sorry, prediction pasa_asmbl_27787.p1 fails validation.
(ATG)	 AG	42864-43035	GT	AAG
(CAA)	 AG	43383-43483	GT	CTG
(GGC)	 AG	43588-43741	GT	AGG
(ACA)	 AG	43934-43971	GT	TGG
(AAC)	 AG	45594-45656	GT	AGG
(GGT)	 AG	47497-47637	AA	CGA
-recovered pasa_asmbl_27787.p1, initial, 42864, 43035
-recovered pasa_asmbl_27787.p1, internal, 42864, 43035
-recovered pasa_asmbl_27787.p1, internal, 43383, 43483
-recovered pasa_asmbl_27787.p1, internal, 43588, 43741
-recovered pasa_asmbl_27787.p1, internal, 43934, 43971
-recovered pasa_asmbl_27787.p1, internal, 45594, 45656
Valid prediction for snap_scaffold_21-snap.1473-T1
Valid prediction for snap_scaffold_21-snap.1488-T1
Valid prediction for snap_scaffold_21-snap.1482-T1
Valid prediction for Augustus_model.g32035.t1
Valid prediction for GlimmerHMM_glimmerT_47994-T1
Valid prediction for Augustus_model.g32026.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9380, rend_intergenic: 5507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11254, rend_intergenic: 11147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15217, rend_intergenic: 12266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28666, rend_intergenic: 21154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32716, rend_intergenic: 31063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33673, rend_intergenic: 32884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42765, rend_intergenic: 38249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48489, rend_intergenic: 44771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71261, rend_intergenic: 61364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87788, rend_intergenic: 78100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92346, rend_intergenic: 90474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 117647
-exon list size: 287


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.8    
5.2    
5.5    
5.9    
6.2    
6.6    
6.9    
7.3    
7.6    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.4    
10.7    
11.1    
11.4    
11.8    
12.1    
12.5    
12.8    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.2    
15.6    
15.9    
16.3    
16.6    
17.0    
17.3    
17.6    
18.0    
18.3    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.8    
21.1    
21.5    
21.8    
22.1    
22.5    
22.8    
23.2    
23.5    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.6    
27.0    
27.3    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.8    
30.1    
30.4    
30.8    
31.1    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
34.9    
35.3    
35.6    
36.0    
36.3    
36.7    
37.0    
37.4    
37.7    
38.1    
38.4    
38.8    
39.1    
39.4    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.9    
42.2    
42.6    
42.9    
43.3    
43.6    
43.9    
44.3    
44.6    
45.0    
45.3    
45.7    
46.0    
46.4    
46.7    
47.1    
47.4    
47.8    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.2    
52.6    
52.9    
53.3    
53.6    
54.0    
54.3    
54.7    
55.0    
55.4    
55.7    
56.1    
56.4    
56.7    
57.1    
57.4    
57.8    
58.1    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.6    
60.9    
61.2    
61.6    
61.9    
62.3    
62.6    
63.0    
63.3    
63.7    
64.0    
64.4    
64.7    
65.1    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.9    
69.2    
69.6    
69.9    
70.2    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.7    
73.0    
73.4    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.5    
76.8    
77.2    
77.5    
77.9    
78.2    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.7    
82.0    
82.4    
82.7    
83.0    
83.4    
83.7    
84.1    
84.4    
84.8    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.2    
87.5    
87.9    
88.2    
88.6    
88.9    
89.3    
89.6    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.4    
92.7    
93.1    
93.4    
93.8    
94.1    
94.5    
94.8    
95.2    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 9380, rend_intergenic: 5507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11254, rend_intergenic: 11147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15217, rend_intergenic: 12266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28666, rend_intergenic: 21154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32716, rend_intergenic: 31063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33673, rend_intergenic: 32884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42765, rend_intergenic: 38249  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48489, rend_intergenic: 44771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71261, rend_intergenic: 61364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87788, rend_intergenic: 78100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92346, rend_intergenic: 90474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support