-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_6205366-6387507

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.1279-T1
Valid prediction for GlimmerHMM_glimmerT_47827-T1
Valid prediction for snap_scaffold_21-snap.1262-T1
Valid prediction for snap_scaffold_21-snap.1289-T1
Valid prediction for GlimmerHMM_glimmerT_47846-T1
Valid prediction for Augustus_model.g31911.t1
Valid prediction for snap_scaffold_21-snap.1282-T1
Valid prediction for Augustus_model.g31914.t1
Valid prediction for snap_scaffold_21-snap.1269-T1
Valid prediction for Augustus_model.g31928.t1
Valid prediction for GlimmerHMM_glimmerT_47826-T1
Valid prediction for snap_scaffold_21-snap.1287-T1
Valid prediction for GlimmerHMM_glimmerT_47836-T1
Valid prediction for GlimmerHMM_glimmerT_47829-T1
Valid prediction for snap_scaffold_21-snap.1266-T1
Valid prediction for snap_scaffold_21-snap.1274-T1
Valid prediction for Augustus_model.g31926.t1
Valid prediction for GlimmerHMM_glimmerT_47845-T1
Valid prediction for Augustus_model.g31921.t1
Valid prediction for GlimmerHMM_glimmerT_47847-T1
Valid prediction for snap_scaffold_21-snap.1258-T1
Valid prediction for snap_scaffold_21-snap.1273-T1
Valid prediction for Augustus_model.g31916.t1
Valid prediction for GlimmerHMM_glimmerT_47837-T1
Valid prediction for Augustus_model.g31918.t1
Valid prediction for snap_scaffold_21-snap.1281-T1
Valid prediction for Augustus_model.g31910.t1
Valid prediction for GlimmerHMM_glimmerT_47831-T1
Valid prediction for GlimmerHMM_glimmerT_47835-T1
Valid prediction for Augustus_model.g31912.t1
Valid prediction for snap_scaffold_21-snap.1277-T1
Valid prediction for snap_scaffold_21-snap.1257-T1
Valid prediction for snap_scaffold_21-snap.1292-T1
Valid prediction for snap_scaffold_21-snap.1271-T1
Valid prediction for snap_scaffold_21-snap.1264-T1
Valid prediction for Augustus_model.g31923.t1
Valid prediction for snap_scaffold_21-snap.1283-T1
Valid prediction for Augustus_model.g31925.t1
Valid prediction for GlimmerHMM_glimmerT_47843-T1
Valid prediction for Augustus_model.g31913.t1
Valid prediction for Augustus_model.g31919.t1
Valid prediction for snap_scaffold_21-snap.1260-T1
Valid prediction for snap_scaffold_21-snap.1272-T1
Valid prediction for GlimmerHMM_glimmerT_47840-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_27719.p1
Valid prediction for snap_scaffold_21-snap.1278-T1
Valid prediction for snap_scaffold_21-snap.1294-T1
Valid prediction for GlimmerHMM_glimmerT_47834-T1
Valid prediction for Augustus_model.g31922.t1
Valid prediction for snap_scaffold_21-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_47825-T1
Valid prediction for snap_scaffold_21-snap.1259-T1
Valid prediction for snap_scaffold_21-snap.1270-T1
Valid prediction for snap_scaffold_21-snap.1263-T1
Valid prediction for GlimmerHMM_glimmerT_47833-T1
Valid prediction for snap_scaffold_21-snap.1288-T1
Valid prediction for HiQ_model.g31915.t1
Valid prediction for snap_scaffold_21-snap.1284-T1
Valid prediction for snap_scaffold_21-snap.1280-T1
Valid prediction for snap_scaffold_21-snap.1276-T1
Valid prediction for GlimmerHMM_glimmerT_47824-T1
Valid prediction for snap_scaffold_21-snap.1285-T1
Valid prediction for snap_scaffold_21-snap.1268-T1
Valid prediction for Augustus_model.g31927.t1
Valid prediction for pasa_asmbl_27720.p1
Valid prediction for GlimmerHMM_glimmerT_47838-T1
Valid prediction for snap_scaffold_21-snap.1256-T1
Valid prediction for snap_scaffold_21-snap.1261-T1
Valid prediction for GlimmerHMM_glimmerT_47844-T1
Valid prediction for snap_scaffold_21-snap.1255-T1
Valid prediction for Augustus_model.g31909.t1
Valid prediction for Augustus_model.g31917.t1
Valid prediction for snap_scaffold_21-snap.1290-T1
Valid prediction for snap_scaffold_21-snap.1267-T1
Valid prediction for HiQ_model.g31924.t1
Valid prediction for GlimmerHMM_glimmerT_47828-T1
Valid prediction for snap_scaffold_21-snap.1291-T1
Valid prediction for Augustus_model.g31920.t1
Valid prediction for snap_scaffold_21-snap.1286-T1
Valid prediction for snap_scaffold_21-snap.1265-T1
Valid prediction for snap_scaffold_21-snap.1275-T1
Valid prediction for GlimmerHMM_glimmerT_47842-T1
Valid prediction for GlimmerHMM_glimmerT_47841-T1
Valid prediction for GlimmerHMM_glimmerT_47823-T1
Valid prediction for GlimmerHMM_glimmerT_47839-T1
Valid prediction for GlimmerHMM_glimmerT_47830-T1
Valid prediction for CodingQuarry_transcript_32571-T1
Valid prediction for GlimmerHMM_glimmerT_47832-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22384, rend_intergenic: 20635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24572, rend_intergenic: 24443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28247, rend_intergenic: 24572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34097, rend_intergenic: 29713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63434, rend_intergenic: 43103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73749, rend_intergenic: 67122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97360, rend_intergenic: 93280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98512, rend_intergenic: 97936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100416, rend_intergenic: 98856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104858, rend_intergenic: 101091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112144, rend_intergenic: 109673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113687, rend_intergenic: 112483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133807, rend_intergenic: 119844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142467, rend_intergenic: 135791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143883, rend_intergenic: 142842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146849, rend_intergenic: 143899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152677, rend_intergenic: 147148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179638, rend_intergenic: 169188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182142
-exon list size: 423


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.9    
6.1    
6.4    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22384, rend_intergenic: 20635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24572, rend_intergenic: 24443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28247, rend_intergenic: 24572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34097, rend_intergenic: 29713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63434, rend_intergenic: 43103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73749, rend_intergenic: 67122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97360, rend_intergenic: 93280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98512, rend_intergenic: 97936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100416, rend_intergenic: 98856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104858, rend_intergenic: 101091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112144, rend_intergenic: 109673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113687, rend_intergenic: 112483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133807, rend_intergenic: 119844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142467, rend_intergenic: 135791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143883, rend_intergenic: 142842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146849, rend_intergenic: 143899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152677, rend_intergenic: 147148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179638, rend_intergenic: 169188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support