-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_4906102-5168546 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.971-T1 Valid prediction for Augustus_model.g31752.t1 Valid prediction for snap_scaffold_21-snap.978-T1 Valid prediction for snap_scaffold_21-snap.998-T1 Valid prediction for snap_scaffold_21-snap.989-T1 Valid prediction for CodingQuarry_transcript_32511-T1 Valid prediction for snap_scaffold_21-snap.996-T1 Valid prediction for HiQ_model.g31746.t1 Valid prediction for snap_scaffold_21-snap.976-T1 Valid prediction for snap_scaffold_21-snap.970-T1 Valid prediction for GlimmerHMM_glimmerT_47624-T1 Valid prediction for CodingQuarry_transcript_32516-T1 Valid prediction for GlimmerHMM_glimmerT_47616-T1 Valid prediction for CodingQuarry_transcript_32515-T1 Valid prediction for GlimmerHMM_glimmerT_47631-T1 Valid prediction for snap_scaffold_21-snap.992-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_21-snap.975-T1 Valid prediction for CodingQuarry_transcript_32512-T1 Valid prediction for snap_scaffold_21-snap.993-T1 Valid prediction for GlimmerHMM_glimmerT_47621-T1 Valid prediction for snap_scaffold_21-snap.1012-T1 Valid prediction for Augustus_model.g31742.t1 Couldn't classify 63484, 63597 Sorry, prediction pasa_asmbl_28546.p1 fails validation. (GCT) CG 63484-63597 GT ATG (TTC) AG 64244-64409 GT TGG (TGA) AG 65759-65826 GT AGG (GCT) AG 65986-66100 GT AGG (GCG) AG 66469-66545 TC GAT -recovered pasa_asmbl_28546.p1, terminal, 66469, 66545 -recovered pasa_asmbl_28546.p1, internal, 64244, 64409 -recovered pasa_asmbl_28546.p1, internal, 65759, 65826 -recovered pasa_asmbl_28546.p1, internal, 65986, 66100 Valid prediction for GlimmerHMM_glimmerT_47614-T1 Valid prediction for snap_scaffold_21-snap.984-T1 Valid prediction for GlimmerHMM_glimmerT_47629-T1 Valid prediction for snap_scaffold_21-snap.988-T1 Valid prediction for snap_scaffold_21-snap.990-T1 Valid prediction for GlimmerHMM_glimmerT_47637-T1 Valid prediction for pasa_asmbl_28543.p1 Valid prediction for Augustus_model.g31743.t1 Valid prediction for pasa_asmbl_28538.p1 Valid prediction for snap_scaffold_21-snap.979-T1 Valid prediction for GlimmerHMM_glimmerT_47612-T1 Valid prediction for GlimmerHMM_glimmerT_47628-T1 Valid prediction for GlimmerHMM_glimmerT_47609-T1 Valid prediction for snap_scaffold_21-snap.997-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for HiQ_model.g31741.t1 Valid prediction for snap_scaffold_21-snap.974-T1 Valid prediction for snap_scaffold_21-snap.1010-T1 Valid prediction for snap_scaffold_21-snap.977-T1 Valid prediction for GlimmerHMM_glimmerT_47613-T1 Valid prediction for Augustus_model.g31738.t1 Valid prediction for snap_scaffold_21-snap.987-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_47615-T1 Valid prediction for Augustus_model.g31747.t1 Valid prediction for snap_scaffold_21-snap.981-T1 Valid prediction for Augustus_model.g31740.t1 Valid prediction for GlimmerHMM_glimmerT_47617-T1 Valid prediction for snap_scaffold_21-snap.1008-T1 Valid prediction for Augustus_model.g31751.t1 Valid prediction for snap_scaffold_21-snap.982-T1 Valid prediction for GlimmerHMM_glimmerT_47611-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47619-T1 Couldn't classify 26321, 26609 Sorry, prediction pasa_asmbl_27613.p1 fails validation. (ATG) GA 18222-18325 GT TGG (GCA) AG 20637-20694 GT AGG (CTC) AG 20899-20994 GT AGG (GAT) AG 21593-21646 GT GTG (GAG) AG 21746-21924 GT ACG (CGA) AG 22020-22156 GT AGG (CCC) AG 22256-22315 GT AGG (CCA) AG 22810-23454 GT AGG (TAC) AG 23828-23905 GT TGG (CAA) AG 24014-24175 GT AGG (GTG) AG 24916-25114 GT AGG (TTC) AG 25678-26073 GT GGG (ATG) AG 26321-26609 CG TTC -recovered pasa_asmbl_27613.p1, initial, 18222, 18325 -recovered pasa_asmbl_27613.p1, terminal, 22256, 22315 -recovered pasa_asmbl_27613.p1, internal, 20637, 20694 -recovered pasa_asmbl_27613.p1, internal, 20899, 20994 -recovered pasa_asmbl_27613.p1, internal, 21593, 21646 -recovered pasa_asmbl_27613.p1, internal, 21746, 21924 -recovered pasa_asmbl_27613.p1, internal, 22020, 22156 -recovered pasa_asmbl_27613.p1, internal, 22256, 22315 -recovered pasa_asmbl_27613.p1, internal, 22810, 23454 -recovered pasa_asmbl_27613.p1, internal, 23828, 23905 -recovered pasa_asmbl_27613.p1, internal, 24014, 24175 -recovered pasa_asmbl_27613.p1, internal, 24916, 25114 -recovered pasa_asmbl_27613.p1, internal, 25678, 26073 Valid prediction for snap_scaffold_21-snap.986-T1 Couldn't classify 26321, 26718 Couldn't classify 27109, 27538 Sorry, prediction CodingQuarry_transcript_32519-T1 fails validation. (ATG) GA 18222-18325 GT TGG (GCA) AG 20637-20694 GT AGG (CTC) AG 20899-20994 GT AGG (GAT) AG 21593-21646 GT GTG (GAG) AG 21746-21924 GT ACG (CGA) AG 22020-22156 GT AGG (CCC) AG 22256-22315 GT AGG (CCA) AG 22810-23454 GT AGG (TAC) AG 23828-23905 GT TGG (CAA) AG 24014-24175 GT AGG (GTG) AG 24916-25114 GT AGG (TTC) AG 25678-26073 GT GGG (ATG) AG 26321-26718 CT ACC (CTA) AC 27109-27538 GT GGG (CTC) AG 27626-28243 GT GGG (CCG) AG 28571-28759 GT GGG (CTA) AG 29068-29754 GT GGG (CCC) AG 30274-31188 GT AAG (GCC) AG 31303-31909 GT AGG (GTG) AG 32005-32174 GT ATG (AGA) AG 32338-32386 GT AGG (GCG) AG 32496-33068 GT AGG (GTC) AG 33192-33264 GT TGG (GAT) AG 33431-33489 GT TGG (GAC) AG 33762-33873 GT AGG (GAA) AG 33979-34078 GT CTG (GCA) AG 34216-34289 GT GGG (ACT) AG 34405-34519 GT GGG (GGC) AG 34654-34741 GA GAG -recovered CodingQuarry_transcript_32519-T1, initial, 18222, 18325 -recovered CodingQuarry_transcript_32519-T1, terminal, 22256, 22315 -recovered CodingQuarry_transcript_32519-T1, terminal, 34654, 34741 -recovered CodingQuarry_transcript_32519-T1, internal, 20637, 20694 -recovered CodingQuarry_transcript_32519-T1, internal, 20899, 20994 -recovered CodingQuarry_transcript_32519-T1, internal, 21593, 21646 -recovered CodingQuarry_transcript_32519-T1, internal, 21746, 21924 -recovered CodingQuarry_transcript_32519-T1, internal, 22020, 22156 -recovered CodingQuarry_transcript_32519-T1, internal, 22256, 22315 -recovered CodingQuarry_transcript_32519-T1, internal, 22810, 23454 -recovered CodingQuarry_transcript_32519-T1, internal, 23828, 23905 -recovered CodingQuarry_transcript_32519-T1, internal, 24014, 24175 -recovered CodingQuarry_transcript_32519-T1, internal, 24916, 25114 -recovered CodingQuarry_transcript_32519-T1, internal, 25678, 26073 -recovered CodingQuarry_transcript_32519-T1, internal, 27626, 28243 -recovered CodingQuarry_transcript_32519-T1, internal, 28571, 28759 -recovered CodingQuarry_transcript_32519-T1, internal, 29068, 29754 -recovered CodingQuarry_transcript_32519-T1, internal, 30274, 31188 -recovered CodingQuarry_transcript_32519-T1, internal, 31303, 31909 -recovered CodingQuarry_transcript_32519-T1, internal, 32005, 32174 -recovered CodingQuarry_transcript_32519-T1, internal, 32338, 32386 -recovered CodingQuarry_transcript_32519-T1, internal, 32496, 33068 -recovered CodingQuarry_transcript_32519-T1, internal, 33192, 33264 -recovered CodingQuarry_transcript_32519-T1, internal, 33431, 33489 -recovered CodingQuarry_transcript_32519-T1, internal, 33762, 33873 -recovered CodingQuarry_transcript_32519-T1, internal, 33979, 34078 -recovered CodingQuarry_transcript_32519-T1, internal, 34216, 34289 -recovered CodingQuarry_transcript_32519-T1, internal, 34405, 34519 Valid prediction for GlimmerHMM_glimmerT_47644-T1 Valid prediction for snap_scaffold_21-snap.1001-T1 Valid prediction for snap_scaffold_21-snap.991-T1 Valid prediction for GlimmerHMM_glimmerT_47618-T1 Valid prediction for GlimmerHMM_glimmerT_47643-T1 Valid prediction for GlimmerHMM_glimmerT_47610-T1 Valid prediction for HiQ_model.g31739.t1 Valid prediction for HiQ_model.g31764.t1 Valid prediction for GlimmerHMM_glimmerT_47627-T1 Valid prediction for GlimmerHMM_glimmerT_47645-T1 Valid prediction for Augustus_model.g31745.t1 Valid prediction for snap_scaffold_21-snap.1006-T1 Valid prediction for GlimmerHMM_glimmerT_47632-T1 Valid prediction for GlimmerHMM_glimmerT_47636-T1 Valid prediction for GlimmerHMM_glimmerT_47639-T1 Valid prediction for HiQ_model.g31757.t1 Valid prediction for CodingQuarry_transcript_32518-T1 Valid prediction for pasa_asmbl_27619.p1 Valid prediction for CodingQuarry_transcript_32521-T1 Valid prediction for CodingQuarry_transcript_32513-T1 Valid prediction for snap_scaffold_21-snap.983-T1 Couldn't classify 207073, 207114 Sorry, prediction pasa_asmbl_27600.p1 fails validation. (CGT) AT 207073-207114 GT AGG (CCA) AG 207501-207575 GT AGG (GTT) AG 207677-207793 GT CTG (GCC) AG 208294-208415 GT CGG (GGA) AG 208894-208967 GT AGG (GCA) AG 209996-210087 CG GAC -recovered pasa_asmbl_27600.p1, terminal, 209996, 210087 -recovered pasa_asmbl_27600.p1, internal, 207501, 207575 -recovered pasa_asmbl_27600.p1, internal, 207677, 207793 -recovered pasa_asmbl_27600.p1, internal, 208294, 208415 -recovered pasa_asmbl_27600.p1, internal, 208894, 208967 Valid prediction for HiQ_model.g31763.t1 Valid prediction for CodingQuarry_transcript_32523-T1 Valid prediction for Augustus_model.g31749.t1 Valid prediction for Augustus_model.g31760.t1 Valid prediction for snap_scaffold_21-snap.1000-T1 Valid prediction for Augustus_model.g31759.t1 Valid prediction for snap_scaffold_21-snap.980-T1 Valid prediction for Augustus_model.g31754.t1 Valid prediction for snap_scaffold_21-snap.972-T1 Valid prediction for snap_scaffold_21-snap.1004-T1 Valid prediction for GlimmerHMM_glimmerT_47622-T1 Valid prediction for pasa_asmbl_27617.p1 Valid prediction for Augustus_model.g31765.t1 Valid prediction for GlimmerHMM_glimmerT_47641-T1 Valid prediction for snap_scaffold_21-snap.1002-T1 Valid prediction for snap_scaffold_21-snap.1011-T1 Couldn't classify 33615, 33873 Sorry, prediction pasa_asmbl_27609.p1 fails validation. (CTT) CT 33615-33873 GT AGG (GAA) AG 33979-34078 GT CTG (GCA) AG 34216-34289 GT GGG (ACT) AG 34405-34519 GT GGG (GGC) AG 34654-34741 GA GAG -recovered pasa_asmbl_27609.p1, terminal, 34654, 34741 -recovered pasa_asmbl_27609.p1, internal, 33979, 34078 -recovered pasa_asmbl_27609.p1, internal, 34216, 34289 -recovered pasa_asmbl_27609.p1, internal, 34405, 34519 Valid prediction for snap_scaffold_21-snap.1009-T1 Valid prediction for snap_scaffold_21-snap.1003-T1 Valid prediction for GlimmerHMM_glimmerT_47635-T1 Couldn't classify 26321, 26628 Couldn't classify 26929, 27538 Sorry, prediction CodingQuarry_transcript_32522-T1 fails validation. (ATG) GA 18222-18325 GT TGG (GCA) AG 20637-20694 GT AGG (CTC) AG 20899-20994 GT AGG (GAT) AG 21593-21646 GT GTG (GAG) AG 21746-21924 GT ACG (CGA) AG 22020-22156 GT AGG (GTG) AG 24916-25114 GT AGG (TTC) AG 25678-26073 GT GGG (ATG) AG 26321-26628 CT GCC (CTA) AC 26929-27538 GT GGG (CTC) AG 27626-28243 GT GGG (CCG) AG 28571-28759 GT GGG (CTA) AG 29068-29754 GT GGG (CCC) AG 30274-31188 GT AAG (GCC) AG 31303-31909 GT AGG (GTG) AG 32005-32174 GT ATG (AGA) AG 32338-32386 GT AGG (GCG) AG 32496-33068 GT AGG (GTC) AG 33192-33264 GT TGG (GAT) AG 33431-33489 GT TGG (GAC) AG 33762-33873 GT AGG (GAA) AG 33979-34078 GT CTG (GCA) AG 34216-34289 GT GGG (ACT) AG 34405-34519 GT GGG (GGC) AG 34654-34741 GA GAG -recovered CodingQuarry_transcript_32522-T1, initial, 18222, 18325 -recovered CodingQuarry_transcript_32522-T1, terminal, 34654, 34741 -recovered CodingQuarry_transcript_32522-T1, internal, 20637, 20694 -recovered CodingQuarry_transcript_32522-T1, internal, 20899, 20994 -recovered CodingQuarry_transcript_32522-T1, internal, 21593, 21646 -recovered CodingQuarry_transcript_32522-T1, internal, 21746, 21924 -recovered CodingQuarry_transcript_32522-T1, internal, 22020, 22156 -recovered CodingQuarry_transcript_32522-T1, internal, 24916, 25114 -recovered CodingQuarry_transcript_32522-T1, internal, 25678, 26073 -recovered CodingQuarry_transcript_32522-T1, internal, 27626, 28243 -recovered CodingQuarry_transcript_32522-T1, internal, 28571, 28759 -recovered CodingQuarry_transcript_32522-T1, internal, 29068, 29754 -recovered CodingQuarry_transcript_32522-T1, internal, 30274, 31188 -recovered CodingQuarry_transcript_32522-T1, internal, 31303, 31909 -recovered CodingQuarry_transcript_32522-T1, internal, 32005, 32174 -recovered CodingQuarry_transcript_32522-T1, internal, 32338, 32386 -recovered CodingQuarry_transcript_32522-T1, internal, 32496, 33068 -recovered CodingQuarry_transcript_32522-T1, internal, 33192, 33264 -recovered CodingQuarry_transcript_32522-T1, internal, 33431, 33489 -recovered CodingQuarry_transcript_32522-T1, internal, 33762, 33873 -recovered CodingQuarry_transcript_32522-T1, internal, 33979, 34078 -recovered CodingQuarry_transcript_32522-T1, internal, 34216, 34289 -recovered CodingQuarry_transcript_32522-T1, internal, 34405, 34519 Valid prediction for Augustus_model.g31750.t1 Valid prediction for CodingQuarry_transcript_32514-T1 Valid prediction for GlimmerHMM_glimmerT_47625-T1 Couldn't classify 26871, 27538 Sorry, prediction pasa_asmbl_27611.p1 fails validation. (AGC) CT 26871-27538 GT GGG (CTC) AG 27626-28243 GT GGG (CCG) AG 28571-28759 GT GGG (GCC) AG 31303-31909 GT AGG (GTG) AG 32005-32174 GT ATG (AGA) AG 32338-32386 GT AGG (GCG) AG 32496-33068 GT AGG (GTC) AG 33192-33264 GT TGG (GAT) AG 33431-33489 GT TGG (GAC) AG 33762-33873 GT AGG (GAA) AG 33979-34078 GT CTG (GCA) AG 34216-34289 GT GGG (ACT) AG 34405-34519 GT GGG (GGC) AG 34654-34741 GA GAG -recovered pasa_asmbl_27611.p1, terminal, 34654, 34741 -recovered pasa_asmbl_27611.p1, internal, 27626, 28243 -recovered pasa_asmbl_27611.p1, internal, 28571, 28759 -recovered pasa_asmbl_27611.p1, internal, 31303, 31909 -recovered pasa_asmbl_27611.p1, internal, 32005, 32174 -recovered pasa_asmbl_27611.p1, internal, 32338, 32386 -recovered pasa_asmbl_27611.p1, internal, 32496, 33068 -recovered pasa_asmbl_27611.p1, internal, 33192, 33264 -recovered pasa_asmbl_27611.p1, internal, 33431, 33489 -recovered pasa_asmbl_27611.p1, internal, 33762, 33873 -recovered pasa_asmbl_27611.p1, internal, 33979, 34078 -recovered pasa_asmbl_27611.p1, internal, 34216, 34289 -recovered pasa_asmbl_27611.p1, internal, 34405, 34519 Valid prediction for GlimmerHMM_glimmerT_47623-T1 Valid prediction for Augustus_model.g31762.t1 Valid prediction for snap_scaffold_21-snap.1015-T1 Valid prediction for snap_scaffold_21-snap.994-T1 Valid prediction for Augustus_model.g31761.t1 Valid prediction for snap_scaffold_21-snap.995-T1 Valid prediction for GlimmerHMM_glimmerT_47620-T1 Valid prediction for Augustus_model.g31748.t1 Valid prediction for GlimmerHMM_glimmerT_47633-T1 Valid prediction for GlimmerHMM_glimmerT_47634-T1 Valid prediction for GlimmerHMM_glimmerT_47630-T1 Valid prediction for snap_scaffold_21-snap.1013-T1 Couldn't classify 55073, 55186 Sorry, prediction pasa_asmbl_27605.p1 fails validation. (GAA) CT 55073-55186 GT ATG (TCG) AG 55357-55598 GT AGG (GAT) AG 55804-55952 GT AGG (AGC) AG 56638-56766 GT TGG (GGT) AG 56909-57073 GT TGG (GCT) AG 57203-57332 GT AGG (GTT) AG 57447-57580 GT AGG (ATA) AG 57695-57854 GT AGG (TTA) AG 57939-58042 GT AGG (GTT) AG 58149-58249 AT AAA add_exon() Sorry, pasa_asmbl_27605.p1 57695-57854-terminal-3 is invalid. -recovered pasa_asmbl_27605.p1, terminal, 57695, 57854 -recovered pasa_asmbl_27605.p1, terminal, 58149, 58249 -recovered pasa_asmbl_27605.p1, internal, 55357, 55598 -recovered pasa_asmbl_27605.p1, internal, 55804, 55952 -recovered pasa_asmbl_27605.p1, internal, 56638, 56766 -recovered pasa_asmbl_27605.p1, internal, 56909, 57073 -recovered pasa_asmbl_27605.p1, internal, 57203, 57332 -recovered pasa_asmbl_27605.p1, internal, 57447, 57580 -recovered pasa_asmbl_27605.p1, internal, 57695, 57854 -recovered pasa_asmbl_27605.p1, internal, 57939, 58042 Valid prediction for GlimmerHMM_glimmerT_47642-T1 Valid prediction for snap_scaffold_21-snap.1016-T1 Valid prediction for GlimmerHMM_glimmerT_47626-T1 Valid prediction for snap_scaffold_21-snap.1007-T1 Valid prediction for snap_scaffold_21-snap.973-T1 Valid prediction for GlimmerHMM_glimmerT_47638-T1 Couldn't classify 26321, 26628 Couldn't classify 26959, 26988 Couldn't classify 27079, 27538 Couldn't classify 31303, 31479 Couldn't classify 31501, 31909 Sorry, prediction CodingQuarry_transcript_32520-T1 fails validation. (ATG) TT 26000-26073 GT GGG (ATG) AG 26321-26628 CT GCC (TTA) AC 26959-26988 CT ACC (CTA) AC 27079-27538 GT GGG (CTC) AG 27626-28243 GT GGG (CCG) AG 28571-28759 GT GGG (GCC) AG 31303-31479 CT ACC (CCC) AC 31501-31909 GT AGG (GTG) AG 32005-32174 GT ATG (AGA) AG 32338-32386 GT AGG (GCG) AG 32496-33068 GT AGG (GTC) AG 33192-33264 GT TGG (GAT) AG 33431-33489 GT TGG (GAC) AG 33762-33873 GT AGG (GAA) AG 33979-34078 GT CTG (GCA) AG 34216-34289 GT GGG (ACT) AG 34405-34519 GT GGG (GGC) AG 34654-34741 GA GAG -recovered CodingQuarry_transcript_32520-T1, initial, 26000, 26073 -recovered CodingQuarry_transcript_32520-T1, terminal, 34654, 34741 -recovered CodingQuarry_transcript_32520-T1, internal, 27626, 28243 -recovered CodingQuarry_transcript_32520-T1, internal, 28571, 28759 -recovered CodingQuarry_transcript_32520-T1, internal, 32005, 32174 -recovered CodingQuarry_transcript_32520-T1, internal, 32338, 32386 -recovered CodingQuarry_transcript_32520-T1, internal, 32496, 33068 -recovered CodingQuarry_transcript_32520-T1, internal, 33192, 33264 -recovered CodingQuarry_transcript_32520-T1, internal, 33431, 33489 -recovered CodingQuarry_transcript_32520-T1, internal, 33762, 33873 -recovered CodingQuarry_transcript_32520-T1, internal, 33979, 34078 -recovered CodingQuarry_transcript_32520-T1, internal, 34216, 34289 -recovered CodingQuarry_transcript_32520-T1, internal, 34405, 34519 Valid prediction for snap_scaffold_21-snap.1014-T1 Valid prediction for Augustus_model.g31744.t1 Valid prediction for Augustus_model.g31753.t1 Valid prediction for GlimmerHMM_glimmerT_47640-T1 Valid prediction for CodingQuarry_transcript_32524-T1 Valid prediction for pasa_asmbl_28152.p1 Valid prediction for snap_scaffold_21-snap.999-T1 Couldn't classify 63832, 63951 Sorry, prediction pasa_asmbl_27604.p1 fails validation. (GTT) TG 63832-63951 GT TGG (ACA) AG 64628-64675 GT ATG (GAA) AG 64784-64901 GT AGG (GTA) AG 65000-65095 GT AGG (GGT) AG 65210-65310 GT AGG (GAC) AG 65517-65660 GT TGG (GGA) AG 65799-65949 GT AGG (GCA) AG 66029-66124 GT TGG (GCA) AG 66325-66438 GT CTG (CGT) AG 66805-66869 GT AGG (GTC) AG 67022-67179 GT GGG (GAT) AG 67404-67524 GA AGG -recovered pasa_asmbl_27604.p1, terminal, 67404, 67524 -recovered pasa_asmbl_27604.p1, internal, 64628, 64675 -recovered pasa_asmbl_27604.p1, internal, 64784, 64901 -recovered pasa_asmbl_27604.p1, internal, 65000, 65095 -recovered pasa_asmbl_27604.p1, internal, 65210, 65310 -recovered pasa_asmbl_27604.p1, internal, 65517, 65660 -recovered pasa_asmbl_27604.p1, internal, 65799, 65949 -recovered pasa_asmbl_27604.p1, internal, 66029, 66124 -recovered pasa_asmbl_27604.p1, internal, 66325, 66438 -recovered pasa_asmbl_27604.p1, internal, 66805, 66869 -recovered pasa_asmbl_27604.p1, internal, 67022, 67179 Valid prediction for snap_scaffold_21-snap.985-T1 Valid prediction for snap_scaffold_21-snap.1005-T1 Couldn't classify 206176, 206274 Couldn't classify 206613, 206816 Sorry, prediction pasa_asmbl_27601.p1 fails validation. (GAG) TG 206176-206274 GT TGG (GCG) AG 206412-206489 GT AGG (GAC) AG 206613-206816 GG CAG -recovered pasa_asmbl_27601.p1, internal, 206412, 206489 Valid prediction for Augustus_model.g31756.t1 Valid prediction for Augustus_model.g31755.t1 Valid prediction for Augustus_model.g31758.t1 Couldn't classify 26321, 26609 Sorry, prediction pasa_asmbl_27615.p1 fails validation. (ATG) CC 24945-25114 GT AGG (TTC) AG 25678-26073 GT GGG (ATG) AG 26321-26609 CG TTC -recovered pasa_asmbl_27615.p1, initial, 24945, 25114 -recovered pasa_asmbl_27615.p1, internal, 25678, 26073 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 140794, rend_intergenic: 108642 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153130, rend_intergenic: 147912 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229902, rend_intergenic: 227705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237501, rend_intergenic: 234545 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237837, rend_intergenic: 237575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242695, rend_intergenic: 240025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 262445 -exon list size: 555 building trellis 0.2 0.4 0.5 0.7 0.9 1.1 1.3 1.4 1.6 1.8 2.0 2.2 2.3 2.5 2.7 2.9 3.1 3.2 3.4 3.6 3.8 3.9 4.1 4.3 4.5 4.7 4.8 5.0 5.2 5.4 5.6 5.7 5.9 6.1 6.3 6.5 6.6 6.8 7.0 7.2 7.4 7.5 7.7 7.9 8.1 8.3 8.4 8.6 8.8 9.0 9.2 9.3 9.5 9.7 9.9 10.1 10.2 10.4 10.6 10.8 11.0 11.1 11.3 11.5 11.7 11.8 12.0 12.2 12.4 12.6 12.7 12.9 13.1 13.3 13.5 13.6 13.8 14.0 14.2 14.4 14.5 14.7 14.9 15.1 15.3 15.4 15.6 15.8 16.0 16.2 16.3 16.5 16.7 16.9 17.1 17.2 17.4 17.6 17.8 18.0 18.1 18.3 18.5 18.7 18.9 19.0 19.2 19.4 19.6 19.7 19.9 20.1 20.3 20.5 20.6 20.8 21.0 21.2 21.4 21.5 21.7 21.9 22.1 22.3 22.4 22.6 22.8 23.0 23.2 23.3 23.5 23.7 23.9 24.1 24.2 24.4 24.6 24.8 25.0 25.1 25.3 25.5 25.7 25.9 26.0 26.2 26.4 26.6 26.8 26.9 27.1 27.3 27.5 27.6 27.8 28.0 28.2 28.4 28.5 28.7 28.9 29.1 29.3 29.4 29.6 29.8 30.0 30.2 30.3 30.5 30.7 30.9 31.1 31.2 31.4 31.6 31.8 32.0 32.1 32.3 32.5 32.7 32.9 33.0 33.2 33.4 33.6 33.8 33.9 34.1 34.3 34.5 34.6 34.8 35.0 35.2 35.4 35.5 35.7 35.9 36.1 36.3 36.4 36.6 36.8 37.0 37.2 37.3 37.5 37.7 37.9 38.1 38.2 38.4 38.6 38.8 39.0 39.1 39.3 39.5 39.7 39.9 40.0 40.2 40.4 40.6 40.8 40.9 41.1 41.3 41.5 41.7 41.8 42.0 42.2 42.4 42.5 42.7 42.9 43.1 43.3 43.4 43.6 43.8 44.0 44.2 44.3 44.5 44.7 44.9 45.1 45.2 45.4 45.6 45.8 46.0 46.1 46.3 46.5 46.7 46.9 47.0 47.2 47.4 47.6 47.8 47.9 48.1 48.3 48.5 48.7 48.8 49.0 49.2 49.4 49.6 49.7 49.9 50.1 50.3 50.4 50.6 50.8 51.0 51.2 51.3 51.5 51.7 51.9 52.1 52.2 52.4 52.6 52.8 53.0 53.1 53.3 53.5 53.7 53.9 54.0 54.2 54.4 54.6 54.8 54.9 55.1 55.3 55.5 55.7 55.8 56.0 56.2 56.4 56.6 56.7 56.9 57.1 57.3 57.5 57.6 57.8 58.0 58.2 58.3 58.5 58.7 58.9 59.1 59.2 59.4 59.6 59.8 60.0 60.1 60.3 60.5 60.7 60.9 61.0 61.2 61.4 61.6 61.8 61.9 62.1 62.3 62.5 62.7 62.8 63.0 63.2 63.4 63.6 63.7 63.9 64.1 64.3 64.5 64.6 64.8 65.0 65.2 65.4 65.5 65.7 65.9 66.1 66.2 66.4 66.6 66.8 67.0 67.1 67.3 67.5 67.7 67.9 68.0 68.2 68.4 68.6 68.8 68.9 69.1 69.3 69.5 69.7 69.8 70.0 70.2 70.4 70.6 70.7 70.9 71.1 71.3 71.5 71.6 71.8 72.0 72.2 72.4 72.5 72.7 72.9 73.1 73.2 73.4 73.6 73.8 74.0 74.1 74.3 74.5 74.7 74.9 75.0 75.2 75.4 75.6 75.8 75.9 76.1 76.3 76.5 76.7 76.8 77.0 77.2 77.4 77.6 77.7 77.9 78.1 78.3 78.5 78.6 78.8 79.0 79.2 79.4 79.5 79.7 79.9 80.1 80.3 80.4 80.6 80.8 81.0 81.1 81.3 81.5 81.7 81.9 82.0 82.2 82.4 82.6 82.8 82.9 83.1 83.3 83.5 83.7 83.8 84.0 84.2 84.4 84.6 84.7 84.9 85.1 85.3 85.5 85.6 85.8 86.0 86.2 86.4 86.5 86.7 86.9 87.1 87.3 87.4 87.6 87.8 88.0 88.2 88.3 88.5 88.7 88.9 89.0 89.2 89.4 89.6 89.8 89.9 90.1 90.3 90.5 90.7 90.8 91.0 91.2 91.4 91.6 91.7 91.9 92.1 92.3 92.5 92.6 92.8 93.0 93.2 93.4 93.5 93.7 93.9 94.1 94.3 94.4 94.6 94.8 95.0 95.2 95.3 95.5 95.7 95.9 96.1 96.2 96.4 96.6 96.8 96.9 97.1 97.3 97.5 97.7 97.8 98.0 98.2 98.4 98.6 98.7 98.9 99.1 99.3 99.5 99.6 99.8 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 140794, rend_intergenic: 108642 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153130, rend_intergenic: 147912 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 229902, rend_intergenic: 227705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237501, rend_intergenic: 234545 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237837, rend_intergenic: 237575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242695, rend_intergenic: 240025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 36 predictions persist after filtering for low support