-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_4441010-4548495

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.879-T1
Valid prediction for snap_scaffold_21-snap.861-T1
Valid prediction for snap_scaffold_21-snap.862-T1
Valid prediction for GlimmerHMM_glimmerT_47524-T1
Valid prediction for GlimmerHMM_glimmerT_47541-T1
Valid prediction for snap_scaffold_21-snap.865-T1
Valid prediction for snap_scaffold_21-snap.868-T1
Valid prediction for GlimmerHMM_glimmerT_47538-T1
Valid prediction for GlimmerHMM_glimmerT_47527-T1
Valid prediction for Augustus_model.g31686.t1
Valid prediction for GlimmerHMM_glimmerT_47536-T1
Valid prediction for snap_scaffold_21-snap.887-T1
Valid prediction for GlimmerHMM_glimmerT_47530-T1
Valid prediction for snap_scaffold_21-snap.883-T1
Valid prediction for Augustus_model.g31679.t1
Valid prediction for snap_scaffold_21-snap.877-T1
Valid prediction for snap_scaffold_21-snap.869-T1
Valid prediction for snap_scaffold_21-snap.874-T1
Valid prediction for snap_scaffold_21-snap.882-T1
Valid prediction for snap_scaffold_21-snap.875-T1
Valid prediction for snap_scaffold_21-snap.864-T1
Valid prediction for Augustus_model.g31687.t1
Valid prediction for GlimmerHMM_glimmerT_47532-T1
Valid prediction for snap_scaffold_21-snap.866-T1
Valid prediction for GlimmerHMM_glimmerT_47529-T1
Valid prediction for Augustus_model.g31682.t1
Valid prediction for snap_scaffold_21-snap.870-T1
Valid prediction for GlimmerHMM_glimmerT_47537-T1
Valid prediction for snap_scaffold_21-snap.884-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47526-T1
Valid prediction for Augustus_model.g31681.t1
Valid prediction for snap_scaffold_21-snap.871-T1
Valid prediction for GlimmerHMM_glimmerT_47534-T1
Valid prediction for snap_scaffold_21-snap.863-T1
Valid prediction for snap_scaffold_21-snap.881-T1
Valid prediction for GlimmerHMM_glimmerT_47535-T1
Valid prediction for GlimmerHMM_glimmerT_47523-T1
Valid prediction for GlimmerHMM_glimmerT_47533-T1
Valid prediction for snap_scaffold_21-snap.872-T1
Valid prediction for snap_scaffold_21-snap.867-T1
Valid prediction for GlimmerHMM_glimmerT_47531-T1
Valid prediction for snap_scaffold_21-snap.885-T1
Valid prediction for GlimmerHMM_glimmerT_47528-T1
Valid prediction for Augustus_model.g31683.t1
Valid prediction for Augustus_model.g31680.t1
Valid prediction for GlimmerHMM_glimmerT_47540-T1
Valid prediction for Augustus_model.g31685.t1
Valid prediction for snap_scaffold_21-snap.873-T1
Valid prediction for GlimmerHMM_glimmerT_47521-T1
Valid prediction for snap_scaffold_21-snap.880-T1
Valid prediction for GlimmerHMM_glimmerT_47522-T1
Valid prediction for snap_scaffold_21-snap.876-T1
Valid prediction for GlimmerHMM_glimmerT_47539-T1
Valid prediction for snap_scaffold_21-snap.878-T1
Valid prediction for Augustus_model.g31688.t1
Valid prediction for GlimmerHMM_glimmerT_47525-T1
Valid prediction for Augustus_model.g31684.t1
Valid prediction for snap_scaffold_21-snap.886-T1
Valid prediction for Augustus_model.g31678.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18809, rend_intergenic: 11877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63059, rend_intergenic: 62200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65113, rend_intergenic: 65031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71093, rend_intergenic: 66018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 107486
-exon list size: 165


building trellis

0.6    
1.2    
1.8    
2.4    
3.0    
3.6    
4.2    
4.8    
5.4    
6.0    
6.6    
7.2    
7.8    
8.4    
9.0    
9.6    
10.2    
10.8    
11.4    
12.0    
12.6    
13.2    
13.8    
14.4    
15.0    
15.6    
16.2    
16.8    
17.4    
18.0    
18.6    
19.2    
19.8    
20.4    
21.0    
21.6    
22.2    
22.8    
23.4    
24.0    
24.6    
25.1    
25.7    
26.3    
26.9    
27.5    
28.1    
28.7    
29.3    
29.9    
30.5    
31.1    
31.7    
32.3    
32.9    
33.5    
34.1    
34.7    
35.3    
35.9    
36.5    
37.1    
37.7    
38.3    
38.9    
39.5    
40.1    
40.7    
41.3    
41.9    
42.5    
43.1    
43.7    
44.3    
44.9    
45.5    
46.1    
46.7    
47.3    
47.9    
48.5    
49.1    
49.7    
50.3    
50.9    
51.5    
52.1    
52.7    
53.3    
53.9    
54.5    
55.1    
55.7    
56.3    
56.9    
57.5    
58.1    
58.7    
59.3    
59.9    
60.5    
61.1    
61.7    
62.3    
62.9    
63.5    
64.1    
64.7    
65.3    
65.9    
66.5    
67.1    
67.7    
68.3    
68.9    
69.5    
70.1    
70.7    
71.3    
71.9    
72.5    
73.1    
73.7    
74.3    
74.9    
75.4    
76.0    
76.6    
77.2    
77.8    
78.4    
79.0    
79.6    
80.2    
80.8    
81.4    
82.0    
82.6    
83.2    
83.8    
84.4    
85.0    
85.6    
86.2    
86.8    
87.4    
88.0    
88.6    
89.2    
89.8    
90.4    
91.0    
91.6    
92.2    
92.8    
93.4    
94.0    
94.6    
95.2    
95.8    
96.4    
97.0    
97.6    
98.2    
98.8    
99.4    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 18809, rend_intergenic: 11877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63059, rend_intergenic: 62200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65113, rend_intergenic: 65031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71093, rend_intergenic: 66018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support