-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_3420481-3698221

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_47394-T1
Valid prediction for GlimmerHMM_glimmerT_47402-T1
Valid prediction for Augustus_model.g31587.t1
Valid prediction for Augustus_model.g31595.t1
Valid prediction for GlimmerHMM_glimmerT_47401-T1
Valid prediction for snap_scaffold_21-snap.687-T1
Valid prediction for snap_scaffold_21-snap.652-T1
Valid prediction for Augustus_model.g31590.t1
Valid prediction for GlimmerHMM_glimmerT_47407-T1
Valid prediction for snap_scaffold_21-snap.676-T1
Valid prediction for snap_scaffold_21-snap.686-T1
Valid prediction for snap_scaffold_21-snap.650-T1
Valid prediction for Augustus_model.g31594.t1
Valid prediction for GlimmerHMM_glimmerT_47408-T1
Valid prediction for snap_scaffold_21-snap.678-T1
Valid prediction for snap_scaffold_21-snap.692-T1
Valid prediction for snap_scaffold_21-snap.670-T1
Valid prediction for Augustus_model.g31592.t1
Valid prediction for GlimmerHMM_glimmerT_47400-T1
Valid prediction for snap_scaffold_21-snap.694-T1
Valid prediction for GlimmerHMM_glimmerT_47397-T1
Valid prediction for snap_scaffold_21-snap.656-T1
Valid prediction for snap_scaffold_21-snap.662-T1
Valid prediction for Augustus_model.g31586.t1
Valid prediction for snap_scaffold_21-snap.698-T1
Valid prediction for snap_scaffold_21-snap.679-T1
Valid prediction for snap_scaffold_21-snap.654-T1
Valid prediction for Augustus_model.g31580.t1
Valid prediction for snap_scaffold_21-snap.657-T1
Valid prediction for snap_scaffold_21-snap.669-T1
Valid prediction for snap_scaffold_21-snap.677-T1
Valid prediction for snap_scaffold_21-snap.697-T1
Valid prediction for snap_scaffold_21-snap.671-T1
Valid prediction for Augustus_model.g31585.t1
Valid prediction for snap_scaffold_21-snap.682-T1
Valid prediction for GlimmerHMM_glimmerT_47395-T1
Valid prediction for snap_scaffold_21-snap.655-T1
Valid prediction for snap_scaffold_21-snap.659-T1
Valid prediction for Augustus_model.g31593.t1
Valid prediction for snap_scaffold_21-snap.666-T1
Valid prediction for snap_scaffold_21-snap.663-T1
Valid prediction for snap_scaffold_21-snap.665-T1
Valid prediction for snap_scaffold_21-snap.672-T1
Valid prediction for snap_scaffold_21-snap.681-T1
Valid prediction for GlimmerHMM_glimmerT_47406-T1
Valid prediction for GlimmerHMM_glimmerT_47405-T1
Valid prediction for snap_scaffold_21-snap.668-T1
Valid prediction for snap_scaffold_21-snap.690-T1
Valid prediction for snap_scaffold_21-snap.645-T1
Valid prediction for GlimmerHMM_glimmerT_47404-T1
Valid prediction for Augustus_model.g31591.t1
Valid prediction for GlimmerHMM_glimmerT_47393-T1
Valid prediction for GlimmerHMM_glimmerT_47412-T1
Valid prediction for snap_scaffold_21-snap.646-T1
Valid prediction for Augustus_model.g31588.t1
Valid prediction for Augustus_model.g31584.t1
Valid prediction for snap_scaffold_21-snap.695-T1
Valid prediction for snap_scaffold_21-snap.673-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.688-T1
Valid prediction for snap_scaffold_21-snap.691-T1
Valid prediction for snap_scaffold_21-snap.693-T1
Valid prediction for snap_scaffold_21-snap.660-T1
Valid prediction for Augustus_model.g31589.t1
Valid prediction for snap_scaffold_21-snap.680-T1
Valid prediction for snap_scaffold_21-snap.684-T1
Valid prediction for snap_scaffold_21-snap.664-T1
Valid prediction for snap_scaffold_21-snap.699-T1
Valid prediction for snap_scaffold_21-snap.648-T1
Valid prediction for snap_scaffold_21-snap.683-T1
Valid prediction for snap_scaffold_21-snap.647-T1
Valid prediction for snap_scaffold_21-snap.653-T1
Valid prediction for snap_scaffold_21-snap.696-T1
Valid prediction for snap_scaffold_21-snap.689-T1
Valid prediction for snap_scaffold_21-snap.685-T1
Valid prediction for GlimmerHMM_glimmerT_47410-T1
Valid prediction for snap_scaffold_21-snap.651-T1
Valid prediction for GlimmerHMM_glimmerT_47398-T1
Valid prediction for GlimmerHMM_glimmerT_47396-T1
Valid prediction for GlimmerHMM_glimmerT_47411-T1
Valid prediction for snap_scaffold_21-snap.649-T1
Valid prediction for snap_scaffold_21-snap.675-T1
Valid prediction for GlimmerHMM_glimmerT_47409-T1
Valid prediction for Augustus_model.g31582.t1
Valid prediction for Augustus_model.g31583.t1
Valid prediction for Augustus_model.g31581.t1
Valid prediction for GlimmerHMM_glimmerT_47399-T1
Valid prediction for snap_scaffold_21-snap.658-T1
Valid prediction for snap_scaffold_21-snap.667-T1
Valid prediction for snap_scaffold_21-snap.661-T1
Valid prediction for snap_scaffold_21-snap.674-T1
Valid prediction for GlimmerHMM_glimmerT_47403-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 58446, rend_intergenic: 55868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81389, rend_intergenic: 79107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85253, rend_intergenic: 82475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90265, rend_intergenic: 87071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103179, rend_intergenic: 96866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 95865, rend_intergenic: 95862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 277741
-exon list size: 279


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.6    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.8    
7.1    
7.5    
7.8    
8.2    
8.5    
8.9    
9.3    
9.6    
10.0    
10.3    
10.7    
11.0    
11.4    
11.7    
12.1    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.7    
16.0    
16.4    
16.7    
17.1    
17.4    
17.8    
18.1    
18.5    
18.9    
19.2    
19.6    
19.9    
20.3    
20.6    
21.0    
21.4    
21.7    
22.1    
22.4    
22.8    
23.1    
23.5    
23.8    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.7    
27.0    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
31.0    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.2    
35.6    
35.9    
36.3    
36.7    
37.0    
37.4    
37.7    
38.1    
38.4    
38.8    
39.1    
39.5    
39.9    
40.2    
40.6    
40.9    
41.3    
41.6    
42.0    
42.3    
42.7    
43.1    
43.4    
43.8    
44.1    
44.5    
44.8    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.0    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
52.0    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.2    
55.5    
55.9    
56.2    
56.6    
56.9    
57.3    
57.7    
58.0    
58.4    
58.7    
59.1    
59.4    
59.8    
60.1    
60.5    
60.9    
61.2    
61.6    
61.9    
62.3    
62.6    
63.0    
63.3    
63.7    
64.1    
64.4    
64.8    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.0    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
73.0    
73.3    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.2    
76.5    
76.9    
77.2    
77.6    
77.9    
78.3    
78.6    
79.0    
79.4    
79.7    
80.1    
80.4    
80.8    
81.1    
81.5    
81.9    
82.2    
82.6    
82.9    
83.3    
83.6    
84.0    
84.3    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.9    
88.3    
88.6    
89.0    
89.3    
89.7    
90.0    
90.4    
90.7    
91.1    
91.5    
91.8    
92.2    
92.5    
92.9    
93.2    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.4    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 58446, rend_intergenic: 55868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81389, rend_intergenic: 79107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85253, rend_intergenic: 82475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90265, rend_intergenic: 87071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103179, rend_intergenic: 96866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 95865, rend_intergenic: 95862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support