-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_2661524-2819828

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.478-T1
Valid prediction for snap_scaffold_21-snap.477-T1
Valid prediction for GlimmerHMM_glimmerT_47296-T1
Valid prediction for GlimmerHMM_glimmerT_47299-T1
Valid prediction for snap_scaffold_21-snap.497-T1
Valid prediction for Augustus_model.g31496.t1
Valid prediction for GlimmerHMM_glimmerT_47292-T1
Valid prediction for snap_scaffold_21-snap.476-T1
Valid prediction for snap_scaffold_21-snap.508-T1
Valid prediction for Augustus_model.g31502.t1
Valid prediction for snap_scaffold_21-snap.506-T1
Valid prediction for snap_scaffold_21-snap.507-T1
Valid prediction for snap_scaffold_21-snap.483-T1
Valid prediction for Augustus_model.g31500.t1
Valid prediction for GlimmerHMM_glimmerT_47289-T1
Valid prediction for snap_scaffold_21-snap.509-T1
Valid prediction for Augustus_model.g31504.t1
Valid prediction for Augustus_model.g31501.t1
Valid prediction for snap_scaffold_21-snap.502-T1
Valid prediction for GlimmerHMM_glimmerT_47297-T1
Valid prediction for snap_scaffold_21-snap.501-T1
Valid prediction for snap_scaffold_21-snap.503-T1
Valid prediction for GlimmerHMM_glimmerT_47285-T1
Valid prediction for snap_scaffold_21-snap.488-T1
Valid prediction for Augustus_model.g31503.t1
Valid prediction for snap_scaffold_21-snap.484-T1
Valid prediction for GlimmerHMM_glimmerT_47294-T1
Valid prediction for GlimmerHMM_glimmerT_47286-T1
Valid prediction for Augustus_model.g31498.t1
Valid prediction for GlimmerHMM_glimmerT_47298-T1
Valid prediction for snap_scaffold_21-snap.481-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.495-T1
Valid prediction for snap_scaffold_21-snap.491-T1
Valid prediction for snap_scaffold_21-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_47295-T1
Valid prediction for snap_scaffold_21-snap.499-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47301-T1
Valid prediction for snap_scaffold_21-snap.498-T1
Valid prediction for GlimmerHMM_glimmerT_47293-T1
Valid prediction for snap_scaffold_21-snap.500-T1
Valid prediction for snap_scaffold_21-snap.496-T1
Valid prediction for snap_scaffold_21-snap.492-T1
Valid prediction for GlimmerHMM_glimmerT_47283-T1
Valid prediction for snap_scaffold_21-snap.490-T1
Valid prediction for GlimmerHMM_glimmerT_47300-T1
Valid prediction for snap_scaffold_21-snap.479-T1
Valid prediction for GlimmerHMM_glimmerT_47288-T1
Valid prediction for GlimmerHMM_glimmerT_47287-T1
Valid prediction for snap_scaffold_21-snap.493-T1
Valid prediction for GlimmerHMM_glimmerT_47290-T1
Valid prediction for snap_scaffold_21-snap.485-T1
Valid prediction for snap_scaffold_21-snap.505-T1
Valid prediction for Augustus_model.g31499.t1
Valid prediction for snap_scaffold_21-snap.504-T1
Valid prediction for GlimmerHMM_glimmerT_47284-T1
Valid prediction for Augustus_model.g31497.t1
Valid prediction for Augustus_model.g31505.t1
Valid prediction for snap_scaffold_21-snap.482-T1
Valid prediction for snap_scaffold_21-snap.486-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_47291-T1
Valid prediction for snap_scaffold_21-snap.489-T1
Valid prediction for snap_scaffold_21-snap.494-T1
Valid prediction for snap_scaffold_21-snap.487-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16388, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27115, rend_intergenic: 21009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39714, rend_intergenic: 35151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59697, rend_intergenic: 57935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63681, rend_intergenic: 60388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66575, rend_intergenic: 63981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73845, rend_intergenic: 70080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76181, rend_intergenic: 75568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81371, rend_intergenic: 76680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95181, rend_intergenic: 88910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101848, rend_intergenic: 96594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133935, rend_intergenic: 126275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 158305
-exon list size: 243


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
13.9    
14.3    
14.7    
15.1    
15.5    
15.9    
16.3    
16.7    
17.1    
17.6    
18.0    
18.4    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.6    
22.0    
22.4    
22.9    
23.3    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.5    
26.9    
27.3    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.4    
31.8    
32.2    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.6    
38.0    
38.4    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.6    
62.0    
62.4    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.8    
68.2    
68.6    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.7    
73.1    
73.5    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.7    
77.1    
77.6    
78.0    
78.4    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.6    
82.0    
82.4    
82.9    
83.3    
83.7    
84.1    
84.5    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 16388, rend_intergenic: 14772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27115, rend_intergenic: 21009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39714, rend_intergenic: 35151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59697, rend_intergenic: 57935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63681, rend_intergenic: 60388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66575, rend_intergenic: 63981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73845, rend_intergenic: 70080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76181, rend_intergenic: 75568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81371, rend_intergenic: 76680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95181, rend_intergenic: 88910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101848, rend_intergenic: 96594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133935, rend_intergenic: 126275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support