-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_12043135-12129199

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.2613-T1
Valid prediction for snap_scaffold_21-snap.2610-T1
Valid prediction for GlimmerHMM_glimmerT_48729-T1
Valid prediction for snap_scaffold_21-snap.2604-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48737-T1
Valid prediction for snap_scaffold_21-snap.2611-T1
Valid prediction for snap_scaffold_21-snap.2607-T1
Valid prediction for GlimmerHMM_glimmerT_48736-T1
Couldn't classify 85764, 85853
Sorry, prediction GlimmerHMM_glimmerT_48740-T1 fails validation.
(ATG)	 CT	80286-80807	GT	CGG
(CTG)	 AG	85764-85853	GT	AGG
-recovered GlimmerHMM_glimmerT_48740-T1, initial, 80286, 80807
-recovered GlimmerHMM_glimmerT_48740-T1, internal, 85764, 85853
Valid prediction for snap_scaffold_21-snap.2605-T1
Valid prediction for GlimmerHMM_glimmerT_48732-T1
Valid prediction for GlimmerHMM_glimmerT_48739-T1
Valid prediction for GlimmerHMM_glimmerT_48727-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2615-T1
Valid prediction for snap_scaffold_21-snap.2617-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_48735-T1
Valid prediction for snap_scaffold_21-snap.2603-T1
Valid prediction for snap_scaffold_21-snap.2609-T1
Valid prediction for GlimmerHMM_glimmerT_48733-T1
Valid prediction for snap_scaffold_21-snap.2614-T1
Valid prediction for snap_scaffold_21-snap.2608-T1
Valid prediction for snap_scaffold_21-snap.2616-T1
Valid prediction for snap_scaffold_21-snap.2606-T1
Valid prediction for snap_scaffold_21-snap.2618-T1
Valid prediction for GlimmerHMM_glimmerT_48738-T1
Valid prediction for GlimmerHMM_glimmerT_48730-T1
Valid prediction for GlimmerHMM_glimmerT_48731-T1
Valid prediction for snap_scaffold_21-snap.2619-T1
Valid prediction for GlimmerHMM_glimmerT_48728-T1
Valid prediction for GlimmerHMM_glimmerT_48734-T1
Valid prediction for snap_scaffold_21-snap.2612-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5722, rend_intergenic: 4149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12185, rend_intergenic: 5781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28893, rend_intergenic: 14994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39012, rend_intergenic: 35870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50293, rend_intergenic: 40127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54059, rend_intergenic: 51898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71290, rend_intergenic: 67352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 86065
-exon list size: 109


building trellis

0.9    
1.8    
2.7    
3.6    
4.5    
5.4    
6.3    
7.2    
8.1    
9.0    
9.9    
10.8    
11.7    
12.6    
13.5    
14.4    
15.3    
16.2    
17.1    
18.0    
18.9    
19.8    
20.7    
21.6    
22.5    
23.4    
24.3    
25.2    
26.1    
27.0    
27.9    
28.8    
29.7    
30.6    
31.5    
32.4    
33.3    
34.2    
35.1    
36.0    
36.9    
37.8    
38.7    
39.6    
40.5    
41.4    
42.3    
43.2    
44.1    
45.0    
45.9    
46.8    
47.7    
48.6    
49.5    
50.5    
51.4    
52.3    
53.2    
54.1    
55.0    
55.9    
56.8    
57.7    
58.6    
59.5    
60.4    
61.3    
62.2    
63.1    
64.0    
64.9    
65.8    
66.7    
67.6    
68.5    
69.4    
70.3    
71.2    
72.1    
73.0    
73.9    
74.8    
75.7    
76.6    
77.5    
78.4    
79.3    
80.2    
81.1    
82.0    
82.9    
83.8    
84.7    
85.6    
86.5    
87.4    
88.3    
89.2    
90.1    
91.0    
91.9    
92.8    
93.7    
94.6    
95.5    
96.4    
97.3    
98.2    
99.1    
-found 11 predictions from path traversal
Error with prediction: snap lend_intergenic: 5722, rend_intergenic: 4149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12185, rend_intergenic: 5781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28893, rend_intergenic: 14994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39012, rend_intergenic: 35870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50293, rend_intergenic: 40127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54059, rend_intergenic: 51898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71290, rend_intergenic: 67352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11523
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support