-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_11321220-11448544

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 15232, 15412
Couldn't classify 16694, 17955
Sorry, prediction pasa_asmbl_28926.p1 fails validation.
(GCT)	 GC	15232-15412	GT	AGG
(GTA)	 AG	16694-17955	GA	GGG
Valid prediction for snap_scaffold_21-snap.2436-T1
Valid prediction for snap_scaffold_21-snap.2431-T1
Valid prediction for snap_scaffold_21-snap.2449-T1
Valid prediction for snap_scaffold_21-snap.2433-T1
Valid prediction for Augustus_model.g32492.t1
Couldn't classify 64530, 67556
Couldn't classify 69421, 69571
Sorry, prediction pasa_asmbl_28931.p1 fails validation.
(AGT)	 CC	64530-67556	GC	AGG
(ACT)	 AG	69201-69262	GT	AGG
(AGA)	 AG	69421-69571	CT	CCC
-recovered pasa_asmbl_28931.p1, internal, 69201, 69262
Valid prediction for snap_scaffold_21-snap.2427-T1
Valid prediction for Augustus_model.g32489.t1
Valid prediction for Augustus_model.g32496.t1
Valid prediction for snap_scaffold_21-snap.2429-T1
Valid prediction for snap_scaffold_21-snap.2444-T1
Valid prediction for snap_scaffold_21-snap.2453-T1
Valid prediction for GlimmerHMM_glimmerT_48628-T1
Valid prediction for snap_scaffold_21-snap.2455-T1
Valid prediction for Augustus_model.g32487.t1
Valid prediction for Augustus_model.g32488.t1
Valid prediction for GlimmerHMM_glimmerT_48629-T1
Valid prediction for snap_scaffold_21-snap.2447-T1
Valid prediction for GlimmerHMM_glimmerT_48630-T1
Valid prediction for Augustus_model.g32494.t1
Couldn't classify 7297, 7353
Sorry, prediction pasa_asmbl_28925.p1 fails validation.
(GCA)	 AA	7297-7353	GT	GGG
(GAG)	 AG	7656-7913	CT	GAC
-recovered pasa_asmbl_28925.p1, terminal, 7656, 7913
Couldn't classify 69917, 70179
Couldn't classify 70417, 71032
Sorry, prediction pasa_asmbl_28933.p1 fails validation.
(CTC)	 CT	69917-70179	GT	AGG
(GTT)	 AG	70417-71032	AG	ACA
Valid prediction for GlimmerHMM_glimmerT_48622-T1
Valid prediction for Augustus_model.g32493.t1
Valid prediction for snap_scaffold_21-snap.2426-T1
Valid prediction for snap_scaffold_21-snap.2438-T1
Valid prediction for GlimmerHMM_glimmerT_48618-T1
Valid prediction for snap_scaffold_21-snap.2428-T1
Valid prediction for snap_scaffold_21-snap.2441-T1
Valid prediction for GlimmerHMM_glimmerT_48620-T1
Valid prediction for Augustus_model.g32495.t1
Valid prediction for GlimmerHMM_glimmerT_48627-T1
Valid prediction for snap_scaffold_21-snap.2439-T1
Valid prediction for GlimmerHMM_glimmerT_48624-T1
Valid prediction for snap_scaffold_21-snap.2437-T1
Valid prediction for snap_scaffold_21-snap.2443-T1
Valid prediction for snap_scaffold_21-snap.2432-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.2456-T1
Valid prediction for GlimmerHMM_glimmerT_48619-T1
Valid prediction for snap_scaffold_21-snap.2446-T1
Valid prediction for GlimmerHMM_glimmerT_48626-T1
Valid prediction for snap_scaffold_21-snap.2450-T1
Valid prediction for snap_scaffold_21-snap.2445-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48623-T1
Valid prediction for snap_scaffold_21-snap.2448-T1
Valid prediction for snap_scaffold_21-snap.2435-T1
Valid prediction for snap_scaffold_21-snap.2430-T1
Valid prediction for GlimmerHMM_glimmerT_48625-T1
Valid prediction for snap_scaffold_21-snap.2452-T1
Valid prediction for snap_scaffold_21-snap.2442-T1
Valid prediction for GlimmerHMM_glimmerT_48621-T1
Valid prediction for Augustus_model.g32491.t1
Valid prediction for snap_scaffold_21-snap.2451-T1
Valid prediction for snap_scaffold_21-snap.2454-T1
Valid prediction for Augustus_model.g32490.t1
Valid prediction for snap_scaffold_21-snap.2440-T1
Valid prediction for snap_scaffold_21-snap.2434-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34013, rend_intergenic: 29432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56998, rend_intergenic: 55208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65185, rend_intergenic: 58556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75379, rend_intergenic: 65212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81689, rend_intergenic: 77509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82673, rend_intergenic: 82534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92164, rend_intergenic: 82887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98679, rend_intergenic: 94604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100076, rend_intergenic: 98969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112868, rend_intergenic: 100872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122600, rend_intergenic: 113941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 127325
-exon list size: 194


building trellis

0.5    
1.0    
1.5    
2.0    
2.6    
3.1    
3.6    
4.1    
4.6    
5.1    
5.6    
6.1    
6.6    
7.1    
7.7    
8.2    
8.7    
9.2    
9.7    
10.2    
10.7    
11.2    
11.7    
12.2    
12.8    
13.3    
13.8    
14.3    
14.8    
15.3    
15.8    
16.3    
16.8    
17.3    
17.9    
18.4    
18.9    
19.4    
19.9    
20.4    
20.9    
21.4    
21.9    
22.4    
23.0    
23.5    
24.0    
24.5    
25.0    
25.5    
26.0    
26.5    
27.0    
27.6    
28.1    
28.6    
29.1    
29.6    
30.1    
30.6    
31.1    
31.6    
32.1    
32.7    
33.2    
33.7    
34.2    
34.7    
35.2    
35.7    
36.2    
36.7    
37.2    
37.8    
38.3    
38.8    
39.3    
39.8    
40.3    
40.8    
41.3    
41.8    
42.3    
42.9    
43.4    
43.9    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.4    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.6    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.1    
56.6    
57.1    
57.7    
58.2    
58.7    
59.2    
59.7    
60.2    
60.7    
61.2    
61.7    
62.2    
62.8    
63.3    
63.8    
64.3    
64.8    
65.3    
65.8    
66.3    
66.8    
67.3    
67.9    
68.4    
68.9    
69.4    
69.9    
70.4    
70.9    
71.4    
71.9    
72.4    
73.0    
73.5    
74.0    
74.5    
75.0    
75.5    
76.0    
76.5    
77.0    
77.6    
78.1    
78.6    
79.1    
79.6    
80.1    
80.6    
81.1    
81.6    
82.1    
82.7    
83.2    
83.7    
84.2    
84.7    
85.2    
85.7    
86.2    
86.7    
87.2    
87.8    
88.3    
88.8    
89.3    
89.8    
90.3    
90.8    
91.3    
91.8    
92.3    
92.9    
93.4    
93.9    
94.4    
94.9    
95.4    
95.9    
96.4    
96.9    
97.4    
98.0    
98.5    
99.0    
99.5    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 34013, rend_intergenic: 29432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56998, rend_intergenic: 55208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65185, rend_intergenic: 58556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75379, rend_intergenic: 65212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81689, rend_intergenic: 77509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82673, rend_intergenic: 82534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92164, rend_intergenic: 82887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98679, rend_intergenic: 94604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100076, rend_intergenic: 98969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112868, rend_intergenic: 100872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122600, rend_intergenic: 113941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support