-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_1095498-1254161

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_47075-T1
Valid prediction for HiQ_model.g31369.t1
Valid prediction for snap_scaffold_21-snap.199-T1
Valid prediction for GlimmerHMM_glimmerT_47087-T1
Valid prediction for snap_scaffold_21-snap.179-T1
Valid prediction for HiQ_model.g31362.t1
Valid prediction for snap_scaffold_21-snap.208-T1
Valid prediction for GlimmerHMM_glimmerT_47083-T1
Valid prediction for snap_scaffold_21-snap.187-T1
Valid prediction for HiQ_model.g31358.t1
Valid prediction for snap_scaffold_21-snap.207-T1
Valid prediction for snap_scaffold_21-snap.186-T1
Valid prediction for GlimmerHMM_glimmerT_47084-T1
Couldn't classify 111924, 112028
Sorry, prediction pasa_asmbl_28337.p1 fails validation.
(GCG)	 CA	111924-112028	GT	AGG
(ATC)	 AG	112113-112185	GT	CGG
(GTA)	 AG	112341-112423	GT	AGG
(ATC)	 AG	112800-113003	GT	AGG
(TCC)	 AG	113887-114021	GT	AGG
(GTG)	 AG	115841-116032	GG	GAG
-recovered pasa_asmbl_28337.p1, terminal, 115841, 116032
-recovered pasa_asmbl_28337.p1, internal, 112113, 112185
-recovered pasa_asmbl_28337.p1, internal, 112341, 112423
-recovered pasa_asmbl_28337.p1, internal, 112800, 113003
-recovered pasa_asmbl_28337.p1, internal, 113887, 114021
Couldn't classify 69223, 69276
Sorry, prediction pasa_asmbl_28334.p1 fails validation.
(CAA)	 AG	69223-69276	GT	AGG
(GCG)	 AG	69539-69819	GT	AAG
(ATA)	 AG	69922-70095	GT	AGG
(GCG)	 AG	70546-70717	GT	AGG
(GTC)	 AG	71964-72040	GT	AGG
(GTA)	 AG	72805-72950	GT	CGG
(GTT)	 AG	73444-73865	AC	AGA
-recovered pasa_asmbl_28334.p1, terminal, 73444, 73865
-recovered pasa_asmbl_28334.p1, internal, 69223, 69276
-recovered pasa_asmbl_28334.p1, internal, 69539, 69819
-recovered pasa_asmbl_28334.p1, internal, 69922, 70095
-recovered pasa_asmbl_28334.p1, internal, 70546, 70717
-recovered pasa_asmbl_28334.p1, internal, 71964, 72040
-recovered pasa_asmbl_28334.p1, internal, 72805, 72950
Valid prediction for Augustus_model.g31357.t1
Valid prediction for Augustus_model.g31368.t1
Valid prediction for snap_scaffold_21-snap.184-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.202-T1
Valid prediction for Augustus_model.g31351.t1
Valid prediction for snap_scaffold_21-snap.185-T1
Valid prediction for CodingQuarry_transcript_32434-T1
Valid prediction for snap_scaffold_21-snap.198-T1
Valid prediction for snap_scaffold_21-snap.177-T1
Valid prediction for snap_scaffold_21-snap.191-T1
Valid prediction for GlimmerHMM_glimmerT_47085-T1
Valid prediction for GlimmerHMM_glimmerT_47079-T1
Valid prediction for snap_scaffold_21-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_47077-T1
Valid prediction for GlimmerHMM_glimmerT_47067-T1
Valid prediction for pasa_asmbl_28328.p1
Valid prediction for snap_scaffold_21-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_47069-T1
Valid prediction for snap_scaffold_21-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_47065-T1
Valid prediction for snap_scaffold_21-snap.195-T1
Valid prediction for snap_scaffold_21-snap.180-T1
Valid prediction for snap_scaffold_21-snap.183-T1
Valid prediction for Augustus_model.g31365.t1
Valid prediction for pasa_asmbl_28332.p1
Valid prediction for HiQ_model.g31363.t1
Valid prediction for GlimmerHMM_glimmerT_47064-T1
Valid prediction for Augustus_model.g31359.t1
Valid prediction for Augustus_model.g31349.t1
Valid prediction for snap_scaffold_21-snap.192-T1
Valid prediction for GlimmerHMM_glimmerT_47072-T1
Valid prediction for GlimmerHMM_glimmerT_47073-T1
Valid prediction for Augustus_model.g31353.t1
Valid prediction for GlimmerHMM_glimmerT_47076-T1
Valid prediction for CodingQuarry_transcript_32433-T1
Valid prediction for snap_scaffold_21-snap.201-T1
Valid prediction for snap_scaffold_21-snap.193-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47066-T1
Valid prediction for Augustus_model.g31374.t1
Valid prediction for snap_scaffold_21-snap.181-T1
Valid prediction for GlimmerHMM_glimmerT_47068-T1
Valid prediction for CodingQuarry_transcript_32435-T1
Valid prediction for snap_scaffold_21-snap.200-T1
Valid prediction for GlimmerHMM_glimmerT_47071-T1
Valid prediction for Augustus_model.g31372.t1
Couldn't classify 80277, 80288
Sorry, prediction pasa_asmbl_27383.p1 fails validation.
(ACC)	 TC	80277-80288	GT	TGG
(GTT)	 AG	80420-80483	GT	AGG
(ATC)	 AG	80607-80671	GT	GGG
(GAA)	 AG	80775-80835	GT	CAG
(GCG)	 AG	81065-81146	GT	GAG
(GGA)	 AG	81278-81366	GT	AGG
(GGA)	 AG	81524-81585	GT	AGG
(GAC)	 AG	81910-81990	GT	AGG
(AGC)	 AG	82219-82324	GT	TGG
(GTG)	 AG	82420-82517	GT	AGG
(GTG)	 AG	82712-82807	GT	CCG
(GGC)	 AG	82930-83000	GT	AGG
(GCT)	 AG	83094-83199	CG	AGC
-recovered pasa_asmbl_27383.p1, terminal, 83094, 83199
-recovered pasa_asmbl_27383.p1, internal, 80420, 80483
-recovered pasa_asmbl_27383.p1, internal, 80607, 80671
-recovered pasa_asmbl_27383.p1, internal, 80775, 80835
-recovered pasa_asmbl_27383.p1, internal, 81065, 81146
-recovered pasa_asmbl_27383.p1, internal, 81278, 81366
-recovered pasa_asmbl_27383.p1, internal, 81524, 81585
-recovered pasa_asmbl_27383.p1, internal, 81910, 81990
-recovered pasa_asmbl_27383.p1, internal, 82219, 82324
-recovered pasa_asmbl_27383.p1, internal, 82420, 82517
-recovered pasa_asmbl_27383.p1, internal, 82712, 82807
-recovered pasa_asmbl_27383.p1, internal, 82930, 83000
Valid prediction for Augustus_model.g31350.t1
Valid prediction for snap_scaffold_21-snap.212-T1
Couldn't classify 133336, 134256
Sorry, prediction pasa_asmbl_28327.p1 fails validation.
(GGG)	 GG	133336-134256	TC	TCT
Valid prediction for Augustus_model.g31366.t1
Valid prediction for Augustus_model.g31355.t1
Valid prediction for GlimmerHMM_glimmerT_47082-T1
Valid prediction for snap_scaffold_21-snap.178-T1
Valid prediction for GlimmerHMM_glimmerT_47088-T1
Valid prediction for snap_scaffold_21-snap.203-T1
Valid prediction for snap_scaffold_21-snap.189-T1
Valid prediction for snap_scaffold_21-snap.205-T1
Valid prediction for GlimmerHMM_glimmerT_47074-T1
Valid prediction for Augustus_model.g31354.t1
Valid prediction for Augustus_model.g31360.t1
Valid prediction for Augustus_model.g31361.t1
Valid prediction for Augustus_model.g31364.t1
Valid prediction for snap_scaffold_21-snap.194-T1
Valid prediction for snap_scaffold_21-snap.188-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g31356.t1
Valid prediction for GlimmerHMM_glimmerT_47070-T1
Couldn't classify 71660, 71877
Couldn't classify 72070, 72205
Sorry, prediction pasa_asmbl_27394.p1 fails validation.
(CGC)	 GC	71660-71877	GT	GGG
(CTA)	 AG	72070-72205	AC	CCA
Valid prediction for snap_scaffold_21-snap.204-T1
Valid prediction for snap_scaffold_21-snap.190-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_47081-T1
Valid prediction for Augustus_model.g31370.t1
Valid prediction for snap_scaffold_21-snap.197-T1
Couldn't classify 79708, 79810
Sorry, prediction pasa_asmbl_27387.p2 fails validation.
(ATG)	 AG	78748-78815	GT	CAG
(TCT)	 AG	78924-78971	GT	CGG
(TAT)	 AG	79267-79425	GT	GGG
(GTT)	 AG	79708-79810	GC	GAG
-recovered pasa_asmbl_27387.p2, initial, 78748, 78815
-recovered pasa_asmbl_27387.p2, internal, 78748, 78815
-recovered pasa_asmbl_27387.p2, internal, 78924, 78971
-recovered pasa_asmbl_27387.p2, internal, 79267, 79425
-recovered pasa_asmbl_27387.p2, internal, 79708, 79810
Valid prediction for HiQ_model.g31367.t1
Valid prediction for GlimmerHMM_glimmerT_47078-T1
Valid prediction for Augustus_model.g31352.t1
Couldn't classify 58360, 58572
Sorry, prediction pasa_asmbl_27396.p1 fails validation.
(TCA)	 GC	58360-58572	GT	AGG
(GCC)	 AG	58740-58808	GT	ATG
(GAG)	 AG	58895-58965	GT	AGG
(TGC)	 AG	59094-59208	GT	AGG
(TTC)	 AG	59467-59556	GT	AGG
(GCA)	 AG	59916-60002	GT	AGG
(GCC)	 AG	60538-60570	GT	AGG
(GCA)	 AG	60773-60850	GT	AGG
(ACG)	 AG	61463-61597	GT	AGG
(GAG)	 AG	61783-61848	GT	AGG
(CTG)	 AG	62207-62271	GT	AGG
(GCT)	 AG	62674-62758	GT	GCG
(GTG)	 AG	62885-62961	GT	AGG
(GTT)	 AG	63354-63435	CC	GAC
-recovered pasa_asmbl_27396.p1, terminal, 63354, 63435
-recovered pasa_asmbl_27396.p1, internal, 58740, 58808
-recovered pasa_asmbl_27396.p1, internal, 58895, 58965
-recovered pasa_asmbl_27396.p1, internal, 59094, 59208
-recovered pasa_asmbl_27396.p1, internal, 59467, 59556
-recovered pasa_asmbl_27396.p1, internal, 59916, 60002
-recovered pasa_asmbl_27396.p1, internal, 60538, 60570
-recovered pasa_asmbl_27396.p1, internal, 60773, 60850
-recovered pasa_asmbl_27396.p1, internal, 61463, 61597
-recovered pasa_asmbl_27396.p1, internal, 61783, 61848
-recovered pasa_asmbl_27396.p1, internal, 62207, 62271
-recovered pasa_asmbl_27396.p1, internal, 62674, 62758
-recovered pasa_asmbl_27396.p1, internal, 62885, 62961
Valid prediction for GlimmerHMM_glimmerT_47080-T1
Valid prediction for GlimmerHMM_glimmerT_47086-T1
Valid prediction for Augustus_model.g31371.t1
Valid prediction for snap_scaffold_21-snap.196-T1
Couldn't classify 72506, 72619
Couldn't classify 72754, 73152
Sorry, prediction pasa_asmbl_27393.p1 fails validation.
(GGC)	 CA	72506-72619	GT	AGG
(GTG)	 AG	72754-73152	CG	GCC
Valid prediction for snap_scaffold_21-snap.182-T1
Valid prediction for Augustus_model.g31373.t1
Couldn't classify 69976, 70329
Sorry, prediction pasa_asmbl_27395.p1 fails validation.
(GAC)	 AG	69976-70329	AG	CCA
Valid prediction for CodingQuarry_transcript_32437-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 65936, rend_intergenic: 63305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100152, rend_intergenic: 95640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108906, rend_intergenic: 105692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148239, rend_intergenic: 127190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155551, rend_intergenic: 150942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 158664
-exon list size: 350


building trellis

0.3    
0.6    
0.9    
1.1    
1.4    
1.7    
2.0    
2.3    
2.6    
2.8    
3.1    
3.4    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.2    
6.5    
6.8    
7.1    
7.4    
7.7    
8.0    
8.2    
8.5    
8.8    
9.1    
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9.7    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.0    
42.3    
42.6    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.4    
57.7    
58.0    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.9    
93.2    
93.5    
93.8    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.6    
96.9    
97.2    
97.4    
97.7    
98.0    
98.3    
98.6    
98.9    
99.1    
99.4    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 65936, rend_intergenic: 63305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100152, rend_intergenic: 95640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108906, rend_intergenic: 105692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148239, rend_intergenic: 127190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155551, rend_intergenic: 150942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support