-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_21/scaffold_21_10015880-10128682

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g32375.t1
Valid prediction for GlimmerHMM_glimmerT_48466-T1
Valid prediction for Augustus_model.g32372.t1
Valid prediction for snap_scaffold_21-snap.2188-T1
Valid prediction for GlimmerHMM_glimmerT_48464-T1
Valid prediction for Augustus_model.g32374.t1
Valid prediction for GlimmerHMM_glimmerT_48457-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2195-T1
Valid prediction for snap_scaffold_21-snap.2186-T1
Valid prediction for snap_scaffold_21-snap.2176-T1
Valid prediction for snap_scaffold_21-snap.2198-T1
Valid prediction for snap_scaffold_21-snap.2191-T1
Valid prediction for snap_scaffold_21-snap.2194-T1
Valid prediction for GlimmerHMM_glimmerT_48469-T1
Valid prediction for snap_scaffold_21-snap.2190-T1
Valid prediction for snap_scaffold_21-snap.2184-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48465-T1
Valid prediction for HiQ_model.g32376.t1
Valid prediction for snap_scaffold_21-snap.2185-T1
Valid prediction for snap_scaffold_21-snap.2177-T1
Valid prediction for Augustus_model.g32377.t1
Valid prediction for CodingQuarry_transcript_32708-T1
Valid prediction for snap_scaffold_21-snap.2197-T1
Valid prediction for snap_scaffold_21-snap.2180-T1
Valid prediction for snap_scaffold_21-snap.2178-T1
Valid prediction for GlimmerHMM_glimmerT_48468-T1
Valid prediction for CodingQuarry_transcript_32707-T1
Couldn't classify 103263, 104443
Sorry, prediction pasa_asmbl_28861.p1 fails validation.
(ATG)	 CT	103017-103032	GT	TGG
(AGG)	 AG	103263-104443	GC	GGG
-recovered pasa_asmbl_28861.p1, initial, 103017, 103032
-recovered pasa_asmbl_28861.p1, internal, 103263, 104443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.2179-T1
Valid prediction for GlimmerHMM_glimmerT_48459-T1
Valid prediction for GlimmerHMM_glimmerT_48462-T1
Valid prediction for snap_scaffold_21-snap.2200-T1
Valid prediction for snap_scaffold_21-snap.2193-T1
Valid prediction for GlimmerHMM_glimmerT_48456-T1
Valid prediction for Augustus_model.g32373.t1
Valid prediction for Augustus_model.g32371.t1
Valid prediction for snap_scaffold_21-snap.2189-T1
Valid prediction for CodingQuarry_transcript_32706-T1
Valid prediction for pasa_asmbl_28217.p1
Valid prediction for snap_scaffold_21-snap.2183-T1
Valid prediction for pasa_asmbl_28006.p1
Valid prediction for GlimmerHMM_glimmerT_48463-T1
Valid prediction for HiQ_model.g32369.t1
Valid prediction for snap_scaffold_21-snap.2192-T1
Valid prediction for snap_scaffold_21-snap.2196-T1
Valid prediction for Augustus_model.g32368.t1
Valid prediction for snap_scaffold_21-snap.2181-T1
Valid prediction for GlimmerHMM_glimmerT_48461-T1
Valid prediction for snap_scaffold_21-snap.2175-T1
Valid prediction for GlimmerHMM_glimmerT_48460-T1
Valid prediction for Augustus_model.g32370.t1
Couldn't classify 98161, 98205
Couldn't classify 99864, 99941
Sorry, prediction pasa_asmbl_28181.p1 fails validation.
(ACA)	 CC	98161-98205	GT	CAG
(GAG)	 AG	98692-98802	GT	AGG
(GTG)	 AG	99410-99619	GT	AGG
(GGA)	 AG	99864-99941	CA	ACC
-recovered pasa_asmbl_28181.p1, internal, 98692, 98802
-recovered pasa_asmbl_28181.p1, internal, 99410, 99619
Valid prediction for snap_scaffold_21-snap.2182-T1
Valid prediction for GlimmerHMM_glimmerT_48467-T1
Valid prediction for snap_scaffold_21-snap.2187-T1
Valid prediction for GlimmerHMM_glimmerT_48458-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19912, rend_intergenic: 7301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24673, rend_intergenic: 22871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30195, rend_intergenic: 28598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56499, rend_intergenic: 44356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57783, rend_intergenic: 56503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58921, rend_intergenic: 57890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61351, rend_intergenic: 59316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100908, rend_intergenic: 96388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112803
-exon list size: 216


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.8    
3.2    
3.7    
4.1    
4.6    
5.0    
5.5    
6.0    
6.4    
6.9    
7.3    
7.8    
8.3    
8.7    
9.2    
9.6    
10.1    
10.6    
11.0    
11.5    
11.9    
12.4    
12.8    
13.3    
13.8    
14.2    
14.7    
15.1    
15.6    
16.1    
16.5    
17.0    
17.4    
17.9    
18.3    
18.8    
19.3    
19.7    
20.2    
20.6    
21.1    
21.6    
22.0    
22.5    
22.9    
23.4    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.6    
27.1    
27.5    
28.0    
28.4    
28.9    
29.4    
29.8    
30.3    
30.7    
31.2    
31.7    
32.1    
32.6    
33.0    
33.5    
33.9    
34.4    
34.9    
35.3    
35.8    
36.2    
36.7    
37.2    
37.6    
38.1    
38.5    
39.0    
39.4    
39.9    
40.4    
40.8    
41.3    
41.7    
42.2    
42.7    
43.1    
43.6    
44.0    
44.5    
45.0    
45.4    
45.9    
46.3    
46.8    
47.2    
47.7    
48.2    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.8    
52.3    
52.8    
53.2    
53.7    
54.1    
54.6    
55.0    
55.5    
56.0    
56.4    
56.9    
57.3    
57.8    
58.3    
58.7    
59.2    
59.6    
60.1    
60.6    
61.0    
61.5    
61.9    
62.4    
62.8    
63.3    
63.8    
64.2    
64.7    
65.1    
65.6    
66.1    
66.5    
67.0    
67.4    
67.9    
68.3    
68.8    
69.3    
69.7    
70.2    
70.6    
71.1    
71.6    
72.0    
72.5    
72.9    
73.4    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.6    
77.1    
77.5    
78.0    
78.4    
78.9    
79.4    
79.8    
80.3    
80.7    
81.2    
81.7    
82.1    
82.6    
83.0    
83.5    
83.9    
84.4    
84.9    
85.3    
85.8    
86.2    
86.7    
87.2    
87.6    
88.1    
88.5    
89.0    
89.4    
89.9    
90.4    
90.8    
91.3    
91.7    
92.2    
92.7    
93.1    
93.6    
94.0    
94.5    
95.0    
95.4    
95.9    
96.3    
96.8    
97.2    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 15 predictions from path traversal
Error with prediction: snap lend_intergenic: 19912, rend_intergenic: 7301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24673, rend_intergenic: 22871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30195, rend_intergenic: 28598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56499, rend_intergenic: 44356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57783, rend_intergenic: 56503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58921, rend_intergenic: 57890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61351, rend_intergenic: 59316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100908, rend_intergenic: 96388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support