-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2098

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 118, 297
Sorry, prediction GlimmerHMM_glimmerT_61470-T1 fails validation.
(GAT)	 AG	118-297	GT	TTG
(CAC)	 AG	714-759	GT	AGG
(GTC)	 AG	927-1046	GT	AGG
(GTG)	 AG	1379-1552	GA	GAG
-recovered GlimmerHMM_glimmerT_61470-T1, terminal, 1379, 1552
-recovered GlimmerHMM_glimmerT_61470-T1, internal, 118, 297
-recovered GlimmerHMM_glimmerT_61470-T1, internal, 714, 759
-recovered GlimmerHMM_glimmerT_61470-T1, internal, 927, 1046
Couldn't classify 118, 297
Couldn't classify 1379, 1548
Sorry, prediction snap_scaffold_2098-snap.1-T1 fails validation.
(GAT)	 AG	118-297	GT	TTG
(CAC)	 AG	714-759	GT	AGG
(GTC)	 AG	927-1046	GT	AGG
(GTG)	 AG	1379-1548	GT	AAG
-recovered snap_scaffold_2098-snap.1-T1, internal, 118, 297
-recovered snap_scaffold_2098-snap.1-T1, internal, 714, 759
-recovered snap_scaffold_2098-snap.1-T1, internal, 927, 1046
-recovered snap_scaffold_2098-snap.1-T1, internal, 1379, 1548
Couldn't classify 158, 297
Sorry, prediction pasa_asmbl_27260.p1 fails validation.
(GGC)	 CA	158-297	GT	TTG
(CAC)	 AG	714-759	GT	AGG
(GTC)	 AG	927-1046	GT	AGG
(GTG)	 AG	1379-1552	GA	GAG
-recovered pasa_asmbl_27260.p1, terminal, 1379, 1552
-recovered pasa_asmbl_27260.p1, internal, 714, 759
-recovered pasa_asmbl_27260.p1, internal, 927, 1046
Couldn't classify 118, 297
Sorry, prediction Augustus_model.g40771.t1 fails validation.
(GAT)	 AG	118-297	GT	TTG
(CAC)	 AG	714-759	GT	AGG
(GTC)	 AG	927-1046	GT	AGG
(GTG)	 AG	1379-1552	GA	GAG
-recovered Augustus_model.g40771.t1, terminal, 1379, 1552
-recovered Augustus_model.g40771.t1, internal, 118, 297
-recovered Augustus_model.g40771.t1, internal, 714, 759
-recovered Augustus_model.g40771.t1, internal, 927, 1046

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1587
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support