-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_209

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8719, 8872
Sorry, prediction GlimmerHMM_glimmerT_60009-T1 fails validation.
(ATG)	 GG	5588-6027	GT	GTG
(GTG)	 AG	8719-8872	GT	AGG
-recovered GlimmerHMM_glimmerT_60009-T1, initial, 5588, 6027
-recovered GlimmerHMM_glimmerT_60009-T1, internal, 8719, 8872
Valid prediction for GlimmerHMM_glimmerT_60008-T1
Valid prediction for snap_scaffold_209-snap.2-T1
Couldn't classify 8719, 8886
Sorry, prediction Augustus_model.g39748.t1 fails validation.
(ATG)	 AG	6186-6214	GT	CAG
(GTG)	 AG	8719-8886	GT	AGG
-recovered Augustus_model.g39748.t1, initial, 6186, 6214
-recovered Augustus_model.g39748.t1, internal, 6186, 6214
-recovered Augustus_model.g39748.t1, internal, 8719, 8886

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8069, 8209
Sorry, prediction snap_scaffold_209-snap.1-T1 fails validation.
(ATG)	 GG	3324-3443	GT	AAG
(AGG)	 AG	8069-8209	GT	ATG
-recovered snap_scaffold_209-snap.1-T1, initial, 3324, 3443
-recovered snap_scaffold_209-snap.1-T1, internal, 8069, 8209

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6288, rend_intergenic: 5205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9611
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 6288, rend_intergenic: 5205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support