-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2087

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 200, 385
Couldn't classify 1245, 1363
Sorry, prediction pasa_asmbl_27256.p1 fails validation.
(CAG)	 CC	200-385	GT	AGG
(GTG)	 AG	637-709	GT	CGG
(AGG)	 AG	1245-1363	CC	TGC
-recovered pasa_asmbl_27256.p1, internal, 637, 709
Couldn't classify 1496, 1548
Sorry, prediction Augustus_model.g40764.t1 fails validation.
(ATG)	 TC	158-385	GT	AGG
(GTG)	 AG	637-709	GT	CGG
(AGG)	 AG	1245-1381	GT	CGG
(CCT)	 AG	1496-1548	GT	AGG
-recovered Augustus_model.g40764.t1, initial, 158, 385
-recovered Augustus_model.g40764.t1, internal, 637, 709
-recovered Augustus_model.g40764.t1, internal, 1245, 1381
-recovered Augustus_model.g40764.t1, internal, 1496, 1548
Couldn't classify 203, 385
Couldn't classify 1496, 1548
Sorry, prediction snap_scaffold_2087-snap.1-T1 fails validation.
(CGG)	 AG	203-385	GT	AGG
(GTG)	 AG	637-709	GT	CGG
(AGG)	 AG	1245-1381	GT	CGG
(CCT)	 AG	1496-1548	GT	AGG
-recovered snap_scaffold_2087-snap.1-T1, internal, 203, 385
-recovered snap_scaffold_2087-snap.1-T1, internal, 637, 709
-recovered snap_scaffold_2087-snap.1-T1, internal, 1245, 1381
-recovered snap_scaffold_2087-snap.1-T1, internal, 1496, 1548
Couldn't classify 203, 385
Sorry, prediction GlimmerHMM_glimmerT_61464-T1 fails validation.
(CGG)	 AG	203-385	GT	AGG
(GTG)	 AG	637-733	GT	TGG
(AGG)	 AG	1245-1405	TT	GAT
-recovered GlimmerHMM_glimmerT_61464-T1, terminal, 1245, 1405
-recovered GlimmerHMM_glimmerT_61464-T1, internal, 203, 385
-recovered GlimmerHMM_glimmerT_61464-T1, internal, 637, 733

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1597
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support