-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2074

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40759.t1
Couldn't classify 261, 371
Sorry, prediction GlimmerHMM_glimmerT_61461-T1 fails validation.
(AGT)	 AG	261-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1260	GT	GAG
-recovered GlimmerHMM_glimmerT_61461-T1, terminal, 1120, 1260
-recovered GlimmerHMM_glimmerT_61461-T1, internal, 261, 371
-recovered GlimmerHMM_glimmerT_61461-T1, internal, 472, 672
-recovered GlimmerHMM_glimmerT_61461-T1, internal, 1120, 1260
Couldn't classify 267, 371
Couldn't classify 1120, 1251
Sorry, prediction pasa_asmbl_27253.p1 fails validation.
(TGT)	 CC	267-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1251	GC	TAG
-recovered pasa_asmbl_27253.p1, internal, 472, 672
-recovered pasa_asmbl_27253.p1, internal, 1120, 1251
Couldn't classify 261, 371
Couldn't classify 1120, 1256
Sorry, prediction snap_scaffold_2074-snap.1-T1 fails validation.
(AGT)	 AG	261-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1256	GT	AGG
-recovered snap_scaffold_2074-snap.1-T1, internal, 261, 371
-recovered snap_scaffold_2074-snap.1-T1, internal, 472, 672
-recovered snap_scaffold_2074-snap.1-T1, internal, 1120, 1256

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1608
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support