-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2072

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1155, 1237
Sorry, prediction snap_scaffold_2072-snap.2-T1 fails validation.
(ATG)	 AC	822-918	GT	TGG
(GCG)	 AG	1155-1237	GT	TTG
-recovered snap_scaffold_2072-snap.2-T1, initial, 822, 918
-recovered snap_scaffold_2072-snap.2-T1, internal, 1155, 1237
Couldn't classify 71, 193
Sorry, prediction Augustus_model.g40758.t1 fails validation.
(CAC)	 AG	71-193	GT	CAG
(GCA)	 AG	651-776	AC	AAA
-recovered Augustus_model.g40758.t1, terminal, 651, 776
-recovered Augustus_model.g40758.t1, internal, 71, 193
Couldn't classify 94, 202
Sorry, prediction snap_scaffold_2072-snap.1-T1 fails validation.
(ACC)	 AG	94-202	GT	ACG
(GCA)	 AG	651-776	AC	AAA
-recovered snap_scaffold_2072-snap.1-T1, terminal, 651, 776
-recovered snap_scaffold_2072-snap.1-T1, internal, 94, 202

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61460-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61460-T1 415-581-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1610
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support